Detailed information NTG1035575

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LWS60_RS15085
• Genome accession: NZ_OU701452
• Coordinates: 3121084..3122076 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate CNR65D6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3116084..3127076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LWS60_RS15060	ygbN	3116739..3118103 (+)	1365	WP_000104457.1	GntP family transporter	-
LWS60_RS15065	-	3118142..3118378 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
LWS60_RS15070	-	3118389..3119816 (-)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
LWS60_RS15075	-	3119816..3120409 (-)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
LWS60_RS15080	-	3120556..3120963 (+)	408	WP_001208066.1	MarR family winged helix-turn-helix transcriptional regulator	-
LWS60_RS15085	rpoS	3121084..3122076 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LWS60_RS15090	nlpD	3122139..3123233 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
LWS60_RS15095	pcm	3123418..3124044 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
LWS60_RS15100	surE	3124038..3124799 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
LWS60_RS15105	truD	3124780..3125829 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
LWS60_RS15110	ispF	3125826..3126305 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LWS60_RS15115	ispD	3126305..3127015 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1035575 LWS60_RS15085 WP_000081550.1 3121084..3122076(-) (rpoS) [Escherichia coli isolate CNR65D6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1035575 LWS60_RS15085 WP_000081550.1 3121084..3122076(-) (rpoS) [Escherichia coli isolate CNR65D6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715