Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB3239_RS14815 Genome accession   NZ_CP166831
Coordinates   2818906..2819652 (-) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2813906..2824652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS14790 (AB3239_14790) mreC 2814311..2815183 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  AB3239_RS14795 (AB3239_14795) mreB 2815214..2816227 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AB3239_RS14800 (AB3239_14800) radC 2816319..2817014 (-) 696 WP_003246034.1 DNA repair protein RadC -
  AB3239_RS14805 (AB3239_14805) maf 2817051..2817620 (-) 570 WP_370956909.1 Maf family nucleotide pyrophosphatase -
  AB3239_RS14810 (AB3239_14810) spoIIB 2817774..2818772 (-) 999 WP_370956910.1 stage II sporulation protein SpoIIB -
  AB3239_RS14815 (AB3239_14815) comC 2818906..2819652 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  AB3239_RS14820 (AB3239_14820) folC 2819793..2821085 (-) 1293 WP_370956911.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB3239_RS14825 (AB3239_14825) valS 2821145..2823787 (-) 2643 WP_120028443.1 valine--tRNA ligase -
  AB3239_RS14830 (AB3239_14830) - 2824235..2824426 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=1035547 AB3239_RS14815 WP_021480242.1 2818906..2819652(-) (comC) [Bacillus subtilis strain TE3T-UV25]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1035547 AB3239_RS14815 WP_021480242.1 2818906..2819652(-) (comC) [Bacillus subtilis strain TE3T-UV25]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment