Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB3239_RS13615 Genome accession   NZ_CP166831
Coordinates   2609014..2609781 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain TE3T-UV25     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2604014..2614781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS13595 (AB3239_13595) ppsR 2604189..2605001 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  AB3239_RS13600 (AB3239_13600) ccpN 2605027..2605665 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  AB3239_RS13605 (AB3239_13605) glyS 2605798..2607837 (-) 2040 WP_232567239.1 glycine--tRNA ligase subunit beta -
  AB3239_RS13610 (AB3239_13610) glyQ 2607830..2608717 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AB3239_RS13615 (AB3239_13615) recO 2609014..2609781 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  AB3239_RS13620 (AB3239_13620) yqzL 2609818..2609961 (-) 144 WP_003230053.1 YqzL family protein -
  AB3239_RS13625 (AB3239_13625) era 2610109..2611014 (-) 906 WP_003230051.1 GTPase Era -
  AB3239_RS13630 (AB3239_13630) - 2610995..2611405 (-) 411 WP_003230049.1 cytidine deaminase -
  AB3239_RS13635 (AB3239_13635) unpK 2611524..2611895 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  AB3239_RS13640 (AB3239_13640) ybeY 2611876..2612349 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  AB3239_RS13645 (AB3239_13645) pgpH 2612350..2614485 (-) 2136 WP_080121334.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1035539 AB3239_RS13615 WP_014477369.1 2609014..2609781(-) (recO) [Bacillus subtilis strain TE3T-UV25]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1035539 AB3239_RS13615 WP_014477369.1 2609014..2609781(-) (recO) [Bacillus subtilis strain TE3T-UV25]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAATTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTTATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment