Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB3239_RS13085 Genome accession   NZ_CP166831
Coordinates   2519133..2519936 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514133..2524936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS13060 (AB3239_13060) glpQB 2515279..2516010 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  AB3239_RS13065 (AB3239_13065) yqiI 2516089..2516709 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  AB3239_RS13070 (AB3239_13070) yqiH 2516724..2517017 (-) 294 WP_003230284.1 lipoprotein -
  AB3239_RS13075 (AB3239_13075) - 2517325..2517477 (+) 153 WP_014480226.1 hypothetical protein -
  AB3239_RS13080 (AB3239_13080) yqiG 2517550..2518668 (+) 1119 WP_348710699.1 NADH-dependent flavin oxidoreductase -
  AB3239_RS13085 (AB3239_13085) spo0A 2519133..2519936 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AB3239_RS13090 (AB3239_13090) spoIVB 2520212..2521492 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  AB3239_RS13095 (AB3239_13095) recN 2521667..2523397 (-) 1731 WP_370956867.1 DNA repair protein RecN Machinery gene
  AB3239_RS13100 (AB3239_13100) argR 2523432..2523881 (-) 450 WP_014114358.1 arginine repressor ArgR -
  AB3239_RS13105 (AB3239_13105) yqxC 2523979..2524824 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1035528 AB3239_RS13085 WP_003226427.1 2519133..2519936(-) (spo0A) [Bacillus subtilis strain TE3T-UV25]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1035528 AB3239_RS13085 WP_003226427.1 2519133..2519936(-) (spo0A) [Bacillus subtilis strain TE3T-UV25]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment