Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB3239_RS12105 Genome accession   NZ_CP166831
Coordinates   2343011..2343631 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2338011..2348631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS12065 (AB3239_12065) ptsA 2339142..2339648 (-) 507 WP_103330270.1 PTS glucose transporter subunit IIA -
  AB3239_RS12070 (AB3239_12070) ypqA 2339786..2340205 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  AB3239_RS12075 (AB3239_12075) sppG 2340226..2340603 (-) 378 WP_015251832.1 YppG family protein -
  AB3239_RS12080 (AB3239_12080) yppF 2340791..2340979 (+) 189 WP_003230690.1 YppF family protein -
  AB3239_RS12085 (AB3239_12085) yppE 2341018..2341389 (-) 372 WP_370956855.1 YppE family protein -
  AB3239_RS12090 (AB3239_12090) yppD 2341435..2341680 (-) 246 WP_021481526.1 DUF5446 family protein -
  AB3239_RS12095 (AB3239_12095) sspM 2341879..2341983 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB3239_RS12100 (AB3239_12100) yppC 2342008..2342970 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  AB3239_RS12105 (AB3239_12105) recU 2343011..2343631 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AB3239_RS12110 (AB3239_12110) ponA 2343653..2346406 (+) 2754 WP_370956856.1 PBP1A family penicillin-binding protein -
  AB3239_RS12115 (AB3239_12115) ypoC 2346482..2346976 (-) 495 WP_120028311.1 YpoC family protein -
  AB3239_RS12120 (AB3239_12120) nth 2346973..2347632 (-) 660 WP_009967580.1 endonuclease III -
  AB3239_RS12125 (AB3239_12125) dnaD 2347651..2348349 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1035527 AB3239_RS12105 WP_004399067.1 2343011..2343631(+) (recU) [Bacillus subtilis strain TE3T-UV25]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1035527 AB3239_RS12105 WP_004399067.1 2343011..2343631(+) (recU) [Bacillus subtilis strain TE3T-UV25]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment