Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB3239_RS05885 Genome accession   NZ_CP166831
Coordinates   1126655..1127233 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121655..1132233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS05860 (AB3239_05860) - 1122166..1122681 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  AB3239_RS05865 (AB3239_05865) - 1122922..1123548 (-) 627 Protein_1089 protoglobin domain-containing protein -
  AB3239_RS05870 (AB3239_05870) comW 1123603..1125132 (-) 1530 WP_370957297.1 FAD-dependent oxidoreductase -
  AB3239_RS05875 (AB3239_05875) yhxC 1125244..1126101 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  AB3239_RS05880 (AB3239_05880) yhzC 1126129..1126362 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  AB3239_RS05885 (AB3239_05885) comK 1126655..1127233 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  AB3239_RS05890 (AB3239_05890) yhxD 1127280..1128179 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  AB3239_RS05895 (AB3239_05895) yhjA 1128396..1128665 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  AB3239_RS05900 (AB3239_05900) yhjB 1128709..1130178 (-) 1470 WP_120027952.1 sodium:solute symporter -
  AB3239_RS05905 (AB3239_05905) yhjC 1130175..1130375 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AB3239_RS05910 (AB3239_05910) - 1130574..1130945 (-) 372 WP_064671203.1 hypothetical protein -
  AB3239_RS05915 (AB3239_05915) yhjE 1131097..1131720 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  AB3239_RS05920 (AB3239_05920) lepB 1131722..1132228 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=1035509 AB3239_RS05885 WP_029317573.1 1126655..1127233(+) (comK) [Bacillus subtilis strain TE3T-UV25]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1035509 AB3239_RS05885 WP_029317573.1 1126655..1127233(+) (comK) [Bacillus subtilis strain TE3T-UV25]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment