Detailed information NTG1035477

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LWS57_RS05615
• Genome accession: NZ_OU701449
• Coordinates: 1169733..1170725 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate CNR85I8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1164733..1175725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LWS57_RS05585	ispD	1164794..1165504 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LWS57_RS05590	ispF	1165504..1165983 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LWS57_RS05595	truD	1165980..1167029 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
LWS57_RS05600	surE	1167010..1167771 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
LWS57_RS05605	pcm	1167765..1168391 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
LWS57_RS05610	nlpD	1168576..1169670 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
LWS57_RS05615	rpoS	1169733..1170725 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LWS57_RS05620	-	1170846..1171253 (-)	408	WP_001208066.1	MarR family winged helix-turn-helix transcriptional regulator	-
LWS57_RS05625	-	1171400..1171993 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
LWS57_RS05630	-	1171993..1173420 (+)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
LWS57_RS05635	-	1173431..1173667 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
LWS57_RS05640	ygbN	1173706..1175070 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1035477 LWS57_RS05615 WP_000081550.1 1169733..1170725(+) (rpoS) [Escherichia coli isolate CNR85I8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1035477 LWS57_RS05615 WP_000081550.1 1169733..1170725(+) (rpoS) [Escherichia coli isolate CNR85I8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715