Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OAM_RS07740 Genome accession   NZ_CP166824
Coordinates   1700824..1702005 (-) Length   393 a.a.
NCBI ID   WP_010441254.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695824..1707005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAM_RS07725 (OAM_007725) - 1696862..1697764 (+) 903 WP_010441258.1 Vmh family MBL fold metallo-hydrolase -
  OAM_RS07730 (OAM_007730) - 1698084..1698299 (+) 216 WP_010441256.1 hypothetical protein -
  OAM_RS07735 (OAM_007735) - 1698654..1700702 (+) 2049 WP_010441255.1 hybrid sensor histidine kinase/response regulator -
  OAM_RS07740 (OAM_007740) cqsA 1700824..1702005 (-) 1182 WP_010441254.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OAM_RS07745 (OAM_007745) - 1702214..1703611 (-) 1398 WP_010441253.1 PLP-dependent aminotransferase family protein -
  OAM_RS07750 (OAM_007750) - 1703716..1704612 (+) 897 WP_010441252.1 EamA family transporter -
  OAM_RS07755 (OAM_007755) - 1704860..1705792 (+) 933 WP_010441251.1 aspartoacylase -
  OAM_RS07760 (OAM_007760) - 1705921..1706940 (-) 1020 WP_010441249.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43760.73 Da        Isoelectric Point: 6.1053

>NTDB_id=1035437 OAM_RS07740 WP_010441254.1 1700824..1702005(-) (cqsA) [Vibrio cyclitrophicus ZF14]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKHAKALTTGLKRIGFNIRSESQ
IVALECGCESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1035437 OAM_RS07740 WP_010441254.1 1700824..1702005(-) (cqsA) [Vibrio cyclitrophicus ZF14]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACTAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACACGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCTGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGCAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGACTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment