Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QUF19_RS17820 Genome accession   NZ_AP028068
Coordinates   154559..155653 (-) Length   364 a.a.
NCBI ID   WP_286301666.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 149559..160653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS17800 - 150272..150580 (+) 309 WP_017111767.1 DUF1289 domain-containing protein -
  QUF19_RS17805 - 150669..151019 (-) 351 WP_286301659.1 HopJ type III effector protein -
  QUF19_RS17810 - 151217..151876 (+) 660 WP_286301661.1 PilZ domain-containing protein -
  QUF19_RS17815 luxQ 151983..154559 (-) 2577 WP_286301663.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QUF19_RS17820 luxP 154559..155653 (-) 1095 WP_286301666.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QUF19_RS17825 - 155962..156276 (-) 315 WP_102434207.1 GIY-YIG nuclease family protein -
  QUF19_RS17830 - 156277..156933 (-) 657 WP_286303316.1 YceH family protein -
  QUF19_RS17835 - 156997..157197 (-) 201 WP_102434209.1 hypothetical protein -
  QUF19_RS17840 - 157393..157707 (+) 315 WP_017105326.1 DUF496 family protein -
  QUF19_RS17845 - 157882..158508 (+) 627 WP_286301673.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  QUF19_RS17850 - 158676..158912 (+) 237 WP_102434211.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41356.47 Da        Isoelectric Point: 4.9668

>NTDB_id=103543 QUF19_RS17820 WP_286301666.1 154559..155653(-) (luxP) [Vibrio sp. FE10]
MKRLLMLLGLAVFSASALSHGTHVLNGYWEYQDYLSKFPEQKALTDKMVEAVQNHPVPLRKTQNEPITISVVYPGQQISD
YWVRNIEAFEKRLDRLRINYQINQVFTRVNADITQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLTSTDTKLILQNI
TTPVRAWDDRQPFMYVGFDHATGSLKLAEYFKNNSKSDSQYSVLYRSEGYISDARGDTFIHEVNTDTNFALKSSFYTKSD
KESGYQAAKISIEKDKDLDFIYACATDVALGAADAIRESGRDILLNGWGGGSAELEAIERGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGDFELVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=103543 QUF19_RS17820 WP_286301666.1 154559..155653(-) (luxP) [Vibrio sp. FE10]
ATGAAACGTTTACTGATGTTGTTGGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGTACCCATGTCCTCAATGG
TTACTGGGAATACCAAGATTACCTTTCTAAATTTCCAGAGCAAAAAGCACTGACCGATAAAATGGTTGAAGCCGTGCAAA
ATCACCCCGTTCCTCTAAGAAAGACTCAAAATGAACCCATCACAATCTCTGTGGTGTATCCGGGACAACAGATCTCAGAT
TATTGGGTTCGCAATATCGAAGCTTTCGAAAAAAGGCTCGATAGGCTGAGAATTAATTATCAGATCAATCAGGTCTTTAC
ACGAGTTAATGCTGATATCACCCAGCAAAGTATTTCATTACAAGAAGCCATCGAAAACAAAACCGACTACTTGATTTTTA
CTCTCGATACCACTCGCCATCGTAAATTTATTGAACATGTTTTGACGTCAACGGATACCAAGTTGATTCTGCAAAATATC
ACTACACCAGTTCGAGCGTGGGATGACAGACAGCCATTCATGTACGTGGGTTTCGACCATGCGACAGGCAGCTTAAAGCT
GGCGGAGTACTTTAAGAATAACAGTAAATCAGACAGCCAATATTCGGTTTTGTACCGCTCAGAAGGCTATATCAGTGATG
CTCGCGGTGATACTTTTATCCACGAAGTGAACACCGATACAAACTTCGCACTCAAGTCTTCCTTTTACACTAAGTCAGAC
AAAGAAAGCGGCTACCAAGCGGCGAAAATCAGCATAGAGAAAGATAAAGACCTAGACTTTATTTATGCATGTGCAACTGA
TGTGGCATTGGGTGCTGCAGATGCGATTCGCGAATCAGGCCGAGATATTCTTCTTAATGGTTGGGGAGGCGGTTCTGCCG
AACTTGAAGCTATCGAAAGAGGTGATCTAGACGTGACTGTGATGCGGATGAATGACGACACTGGCATTGCGATGGCAGAA
GCCATTAAATGGGATTTGGCTGGTTTAGAAGTGCCTACCGTATATTCTGGTGATTTTGAATTGGTCACCAAAGAAGACTC
TCCCGAACGTATTTCTGAACTCAAACAGCGGGCATTTAGATACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.022

100

0.624

Multiple sequence alignment