Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P3C57_RS08345 Genome accession   NZ_OU532556
Coordinates   1606383..1607888 (-) Length   501 a.a.
NCBI ID   WP_072224300.1    Uniprot ID   -
Organism   Campylobacter coli isolate     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1601383..1612888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS08315 (CC177238_001651) - 1601626..1602366 (-) 741 WP_002778542.1 TerC family protein -
  P3C57_RS08320 (CC177238_001652) - 1602507..1603223 (+) 717 WP_002778541.1 ankyrin repeat domain-containing protein -
  P3C57_RS08325 (CC177238_001653) - 1603389..1603625 (+) 237 WP_002778540.1 hypothetical protein -
  P3C57_RS08330 (CC177238_001654) purN 1603763..1604338 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  P3C57_RS08335 (CC177238_001655) - 1604329..1605699 (-) 1371 WP_072224299.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  P3C57_RS08340 (CC177238_001656) - 1605683..1606381 (-) 699 WP_002778537.1 NYN domain-containing protein -
  P3C57_RS08345 (CC177238_001657) comM 1606383..1607888 (-) 1506 WP_072224300.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P3C57_RS08350 (CC177238_001658) def 1607885..1608412 (-) 528 WP_002778535.1 peptide deformylase -
  P3C57_RS08355 (CC177238_001659) clpP 1608440..1609024 (-) 585 WP_002778534.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  P3C57_RS08360 (CC177238_001660) tig 1609024..1610358 (-) 1335 WP_002778532.1 trigger factor -
  P3C57_RS08365 (CC177238_001661) folE 1610479..1611051 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  P3C57_RS08370 (CC177238_001662) fliI 1611051..1612436 (+) 1386 WP_052777218.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56668.67 Da        Isoelectric Point: 8.8323

>NTDB_id=1035404 P3C57_RS08345 WP_072224300.1 1606383..1607888(-) (comM) [Campylobacter coli isolate]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFYILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=1035404 P3C57_RS08345 WP_072224300.1 1606383..1607888(-) (comM) [Campylobacter coli isolate]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATTAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGCATGCATAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTATATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.092

99.601

0.459