Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   P3C57_RS05700 Genome accession   NZ_OU532556
Coordinates   1115573..1115953 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110573..1120953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C57_RS05675 (CC177238_001127) aspS 1111086..1112837 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  P3C57_RS05680 (CC177238_001128) - 1112834..1113409 (+) 576 WP_002781658.1 adenylate kinase -
  P3C57_RS05685 (CC177238_001129) ppa 1113419..1113937 (+) 519 WP_002776378.1 inorganic diphosphatase -
  P3C57_RS05690 (CC177238_001130) msrA 1113985..1114485 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  P3C57_RS05695 (CC177238_001131) - 1114708..1115562 (-) 855 WP_370658880.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  P3C57_RS05700 (CC177238_001132) dprB 1115573..1115953 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  P3C57_RS05705 (CC177238_001133) dprA 1115950..1116720 (-) 771 WP_052777121.1 DNA-processing protein DprA Machinery gene
  P3C57_RS05710 (CC177238_001134) - 1116710..1117762 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  P3C57_RS05715 (CC177238_001135) ilvC 1117765..1118787 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  P3C57_RS05720 (CC177238_001136) - 1118910..1120844 (+) 1935 WP_072224284.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=1035396 P3C57_RS05700 WP_002776373.1 1115573..1115953(-) (dprB) [Campylobacter coli isolate]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1035396 P3C57_RS05700 WP_002776373.1 1115573..1115953(-) (dprB) [Campylobacter coli isolate]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGTGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCCAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421