Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QUF19_RS15755 Genome accession   NZ_AP028067
Coordinates   3506652..3507656 (+) Length   334 a.a.
NCBI ID   WP_017104632.1    Uniprot ID   A0A1B9PSY1
Organism   Vibrio sp. FE10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501652..3512656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS15740 - 3502036..3503325 (-) 1290 WP_102438466.1 malic enzyme-like NAD(P)-binding protein -
  QUF19_RS15745 rpmE 3503660..3503878 (-) 219 WP_017055855.1 50S ribosomal protein L31 -
  QUF19_RS15750 priA 3504210..3506411 (+) 2202 WP_102327197.1 primosomal protein N' -
  QUF19_RS15755 cytR 3506652..3507656 (+) 1005 WP_017104632.1 DNA-binding transcriptional regulator CytR Regulator
  QUF19_RS15760 - 3507779..3508318 (+) 540 WP_065104139.1 SPOR domain-containing protein -
  QUF19_RS15765 hslV 3508555..3509103 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  QUF19_RS15770 hslU 3509162..3510502 (+) 1341 WP_017104629.1 HslU--HslV peptidase ATPase subunit -
  QUF19_RS15775 - 3510658..3511575 (+) 918 WP_286294894.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QUF19_RS15780 rraA 3511649..3512167 (+) 519 WP_017108581.1 ribonuclease E activity regulator RraA -
  QUF19_RS15785 zapB 3512317..3512559 (-) 243 WP_017104626.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36539.05 Da        Isoelectric Point: 6.4911

>NTDB_id=103538 QUF19_RS15755 WP_017104632.1 3506652..3507656(+) (cytR) [Vibrio sp. FE10]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=103538 QUF19_RS15755 WP_017104632.1 3506652..3507656(+) (cytR) [Vibrio sp. FE10]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGAAAACGAGTAGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCTGAGATCATCCGTGGT
ATCGAAGATGCTGCAGTAGAAAATGATTACCTAGTCCTGCTTGGCGACAGTGGTCAACAGAAGAAGCGCGAATCATCATT
TGTTAACTTAGTCTTCACCAAACAAGCTGATGGCATGCTGCTGTTAGGCACCGATCATCCATTTGATGTCAGCAAGCCTG
AACAAAAAAATCTACCACCTATGGTTATGGCGTGTGAATTTGCACCCGAGCTTGAATTACCAACGGTTCACATCGACAAC
CTGACCTCTGCATTTGAAGCCGTGAACTACCTAGCTCAATTAGGTCATAAGCGCATTGCTCAAATCTCTGGGCCAACCAC
TGCAACCCTGTGTAAGTTCCGCCAACAAGGTTACCAACAAGCACTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCTGGCGCACAAGCGGTTCGTCAATTATTAGCACTTCCAGAGCAACCAACTGCA
ATTTTCTGTCACAACGATGCGATGGCAATTGGTGCGATTCAAGAAGCGAAGAAGTTAGGTTTACGTGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACGACGATTTCTCAACCTCGTTACG
AAATTGGACGCCAAGCGATGTTGATGATGCTCGACCTACTTAAAGGTAACGATGTTCAAGCAGGTTCACGCCTACTTGAA
GCTAAACTCGTGGTTCGTGGCAGTACAGCACCACCTCGCATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9PSY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.701

0.877

Multiple sequence alignment