Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUF19_RS14300 Genome accession   NZ_AP028067
Coordinates   3234303..3234821 (-) Length   172 a.a.
NCBI ID   WP_286294734.1    Uniprot ID   -
Organism   Vibrio sp. FE10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3229303..3239821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS14275 rimM 3229332..3229886 (-) 555 WP_009847609.1 ribosome maturation factor RimM -
  QUF19_RS14280 rpsP 3229913..3230161 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  QUF19_RS14285 ffh 3230374..3231768 (-) 1395 WP_029223244.1 signal recognition particle protein -
  QUF19_RS14290 - 3231969..3232763 (+) 795 WP_029223243.1 inner membrane protein YpjD -
  QUF19_RS14295 - 3232891..3234162 (+) 1272 WP_102437670.1 CNNM domain-containing protein -
  QUF19_RS14300 luxS 3234303..3234821 (-) 519 WP_286294734.1 S-ribosylhomocysteine lyase Regulator
  QUF19_RS14305 - 3234846..3235496 (-) 651 WP_122053472.1 hypothetical protein -
  QUF19_RS14310 gshA 3235507..3237075 (-) 1569 WP_286294735.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18950.68 Da        Isoelectric Point: 4.5831

>NTDB_id=103525 QUF19_RS14300 WP_286294734.1 3234303..3234821(-) (luxS) [Vibrio sp. FE10]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIAKAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=103525 QUF19_RS14300 WP_286294734.1 3234303..3234821(-) (luxS) [Vibrio sp. FE10]
ATGCCTTTATTAGATAGTTTTACTGTTGATCATACACGCATGAACGCCCCGGCAGTTCGTGTTGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACGGTATTTGACCTGCGTTTTACTGCACCAAACAAAGATATCCTATCTGAAAAAGGTATCC
ATACTCTAGAGCATCTATACGCTGGATTCATGCGTAATCAATTGAACGGTTCAGATGTGGAGATCATCGATATTTCACCT
ATGGGCTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACGCCTTCAGAGCAACAAGTGGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGATATCGCCAAAGCGATCATTGCTGCTGGTATCTCTGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment