Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DYY95_RS05395 Genome accession   NZ_LT996891
Coordinates   1049255..1050100 (-) Length   281 a.a.
NCBI ID   WP_001566903.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-WT     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044255..1055100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY95_RS05355 rpsR 1045240..1045482 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  DYY95_RS05360 ssbA 1045534..1046037 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  DYY95_RS05365 rpsF 1046058..1046354 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  DYY95_RS05375 - 1046598..1046789 (+) 192 WP_001052483.1 hypothetical protein -
  DYY95_RS05380 ychF 1046875..1047972 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  DYY95_RS05385 - 1047984..1048187 (-) 204 WP_000157349.1 DUF951 domain-containing protein -
  DYY95_RS05390 - 1048217..1049098 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  DYY95_RS05395 spo0J 1049255..1050100 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  DYY95_RS05405 - 1050764..1051867 (+) 1104 WP_000655703.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  DYY95_RS05410 metC 1051864..1053024 (+) 1161 WP_000175846.1 cystathionine beta-lyase MetC -
  DYY95_RS05415 - 1052993..1054834 (+) 1842 WP_000077320.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32869.88 Da        Isoelectric Point: 10.0091

>NTDB_id=1035237 DYY95_RS05395 WP_001566903.1 1049255..1050100(-) (spo0J) [Staphylococcus aureus isolate 24117-WT]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=1035237 DYY95_RS05395 WP_001566903.1 1049255..1050100(-) (spo0J) [Staphylococcus aureus isolate 24117-WT]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384