Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB9K98_RS23710 Genome accession   NZ_CP166764
Coordinates   4909179..4909808 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CRE444     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4904179..4914808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9K98_RS23690 (AB9K98_23690) ycbZ 4904569..4906329 (-) 1761 WP_106474576.1 Lon protease family protein -
  AB9K98_RS23695 (AB9K98_23695) matP 4906515..4906967 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AB9K98_RS23700 (AB9K98_23700) ompA 4907042..4908094 (-) 1053 WP_000750419.1 porin OmpA -
  AB9K98_RS23705 (AB9K98_23705) sulA 4908451..4908960 (-) 510 WP_106474577.1 SOS-induced cell division inhibitor SulA -
  AB9K98_RS23710 (AB9K98_23710) sxy/tfoX 4909179..4909808 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB9K98_RS23715 (AB9K98_23715) yccS 4909771..4911933 (-) 2163 WP_000875015.1 YccS family putative transporter -
  AB9K98_RS23720 (AB9K98_23720) yccF 4911943..4912389 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AB9K98_RS23725 (AB9K98_23725) helD 4912512..4914566 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1035235 AB9K98_RS23710 WP_000839153.1 4909179..4909808(+) (sxy/tfoX) [Escherichia coli strain CRE444]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1035235 AB9K98_RS23710 WP_000839153.1 4909179..4909808(+) (sxy/tfoX) [Escherichia coli strain CRE444]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GAGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment