Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   STAB904_RS05690 Genome accession   NZ_CP007241
Coordinates   1139447..1140409 (-) Length   320 a.a.
NCBI ID   WP_038434149.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134447..1145409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB904_RS05675 (STAB904_06380) - 1135284..1135991 (-) 708 WP_038434147.1 O-methyltransferase -
  STAB904_RS05680 (STAB904_06385) - 1136057..1137253 (-) 1197 WP_002995765.1 OFA family MFS transporter -
  STAB904_RS05685 (STAB904_06390) pepF 1137629..1139434 (-) 1806 WP_038434148.1 oligoendopeptidase F Regulator
  STAB904_RS05690 (STAB904_06395) coiA 1139447..1140409 (-) 963 WP_038434149.1 competence protein CoiA Machinery gene
  STAB904_RS05695 (STAB904_06400) - 1140704..1141420 (-) 717 WP_011528761.1 pseudouridine synthase -
  STAB904_RS05700 (STAB904_06405) nagB 1141494..1142243 (-) 750 WP_038434150.1 glucosamine-6-phosphate deaminase -
  STAB904_RS05705 (STAB904_06410) queA 1142445..1143473 (+) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  STAB904_RS05710 (STAB904_06415) - 1143480..1144700 (+) 1221 WP_010922430.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37741.21 Da        Isoelectric Point: 10.2688

>NTDB_id=103519 STAB904_RS05690 WP_038434149.1 1139447..1140409(-) (coiA) [Streptococcus pyogenes strain 1E1]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKACQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=103519 STAB904_RS05690 WP_038434149.1 1139447..1140409(-) (coiA) [Streptococcus pyogenes strain 1E1]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGTAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTTTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTGGAGCGTCTAAAGAAACGCACCAAAGCCTGTCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGCTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.581

96.875

0.413
  coiA Streptococcus pneumoniae Rx1

41.29

96.875

0.4
  coiA Streptococcus pneumoniae D39

41.29

96.875

0.4
  coiA Streptococcus pneumoniae R6

41.29

96.875

0.4
  coiA Streptococcus pneumoniae TIGR4

41.29

96.875

0.4
  coiA Lactococcus lactis subsp. cremoris KW2

39.024

100

0.4

Multiple sequence alignment