Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB9K42_RS08100 Genome accession   NZ_CP166747
Coordinates   1727898..1728521 (+) Length   207 a.a.
NCBI ID   WP_112002296.1    Uniprot ID   -
Organism   Citrobacter koseri strain CRE191     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722898..1733521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9K42_RS08080 (AB9K42_08080) - 1723297..1725057 (-) 1761 WP_112002297.1 Lon protease family protein -
  AB9K42_RS08085 (AB9K42_08085) matP 1725243..1725695 (+) 453 WP_012132968.1 macrodomain Ter protein MatP -
  AB9K42_RS08090 (AB9K42_08090) ompA 1725770..1726816 (-) 1047 WP_047463714.1 porin OmpA -
  AB9K42_RS08095 (AB9K42_08095) sulA 1727172..1727681 (-) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  AB9K42_RS08100 (AB9K42_08100) sxy/tfoX 1727898..1728521 (+) 624 WP_112002296.1 TfoX/Sxy family DNA transformation protein Regulator
  AB9K42_RS08105 (AB9K42_08105) yccS 1728490..1730637 (-) 2148 WP_112002332.1 YccS family putative transporter -
  AB9K42_RS08110 (AB9K42_08110) - 1730656..1731102 (-) 447 WP_012132963.1 YccF domain-containing protein -
  AB9K42_RS08115 (AB9K42_08115) helD 1731226..1733280 (+) 2055 WP_112002295.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23985.74 Da        Isoelectric Point: 9.4100

>NTDB_id=1035126 AB9K42_RS08100 WP_112002296.1 1727898..1728521(+) (sxy/tfoX) [Citrobacter koseri strain CRE191]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKTLYALEGAIAGIHEAALPAVRRQELAEWAQSLMPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1035126 AB9K42_RS08100 WP_112002296.1 1727898..1728521(+) (sxy/tfoX) [Citrobacter koseri strain CRE191]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGTGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTATTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCGCAGTATTCGCTGGATGCAGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTAACGGTGAAAACTCTCTATGCGTTAGAAGGGGCAATCGCTGGCATACATGAAGCGGCGCTCCCGGCGGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTATGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.921

98.068

0.705

Multiple sequence alignment