Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB9Q07_RS15010 Genome accession   NZ_CP166703
Coordinates   3132043..3132639 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain INFB6138     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3127043..3137639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9Q07_RS14985 (AB9Q07_14985) - 3127163..3128920 (-) 1758 WP_017899459.1 Lon protease family protein -
  AB9Q07_RS14990 (AB9Q07_14990) matP 3129106..3129558 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB9Q07_RS14995 (AB9Q07_14995) ompA 3129762..3130832 (-) 1071 WP_004201430.1 porin OmpA -
  AB9Q07_RS15000 (AB9Q07_15000) sulA 3131185..3131694 (-) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  AB9Q07_RS15005 (AB9Q07_15005) - 3131720..3132025 (+) 306 WP_305242169.1 hypothetical protein -
  AB9Q07_RS15010 (AB9Q07_15010) sxy/tfoX 3132043..3132639 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  AB9Q07_RS15015 (AB9Q07_15015) yccS 3132650..3134785 (-) 2136 WP_305242167.1 YccS family putative transporter -
  AB9Q07_RS15020 (AB9Q07_15020) - 3134803..3135249 (-) 447 WP_004201437.1 YccF domain-containing protein -
  AB9Q07_RS15025 (AB9Q07_15025) helD 3135374..3137428 (+) 2055 WP_259116564.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=1035043 AB9Q07_RS15010 WP_004201433.1 3132043..3132639(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain INFB6138]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1035043 AB9Q07_RS15010 WP_004201433.1 3132043..3132639(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain INFB6138]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAATAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCACGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment