Detailed information NTG1035012

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACAF57_RS03945
• Genome accession: NZ_CP166700
• Coordinates: 778756..780123 (-)
• Length: 455 a.a.
• NCBI ID: WP_080973663.1
• Uniprot ID: -
• Organism: Leuconostoc lactis strain PG-3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 773756..785123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAF57_RS03920 (ACAF57_03920)	-	773789..774328 (-)	540	WP_048700335.1	hypothetical protein	-
ACAF57_RS03925 (ACAF57_03925)	adhP	774491..775546 (-)	1056	WP_029510101.1	alcohol dehydrogenase AdhP	-
ACAF57_RS03930 (ACAF57_03930)	-	775709..776614 (-)	906	WP_370673209.1	NADP-dependent oxidoreductase	-
ACAF57_RS03935 (ACAF57_03935)	gltX	776750..778246 (-)	1497	WP_048700419.1	glutamate--tRNA ligase	-
ACAF57_RS03940 (ACAF57_03940)	-	778422..778745 (-)	324	WP_370673181.1	hypothetical protein	-
ACAF57_RS03945 (ACAF57_03945)	radA	778756..780123 (-)	1368	WP_080973663.1	DNA repair protein RadA	Machinery gene
ACAF57_RS03950 (ACAF57_03950)	-	780110..780991 (-)	882	WP_048700328.1	metallophosphoesterase	-
ACAF57_RS03955 (ACAF57_03955)	-	781009..781473 (-)	465	WP_370673182.1	NUDIX hydrolase	-
ACAF57_RS03960 (ACAF57_03960)	-	781482..782021 (-)	540	WP_048700325.1	deoxyuridine 5'-triphosphate nucleotidohydrolase	-
ACAF57_RS03965 (ACAF57_03965)	-	782247..782528 (+)	282	WP_010002509.1	GNAT family N-acetyltransferase	-
ACAF57_RS03970 (ACAF57_03970)	rpiA	782525..783214 (+)	690	WP_048700323.1	ribose-5-phosphate isomerase RpiA	-
ACAF57_RS03975 (ACAF57_03975)	-	783378..784802 (+)	1425	WP_370673183.1	aspartate ammonia-lyase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49195.34 Da
• Isoelectric Point: 5.2629

>NTDB_id=1035012 ACAF57_RS03945 WP_080973663.1 778756..780123(-) (radA) [Leuconostoc lactis strain PG-3]
MAKVKTQFICSNCGFTSARYLGRCSNCGEWGTFVEEKILPDTNDRKSRVSLDGRTAKVEKINEVTSEETPRVATNLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAHEGRVLYVTGEESATQVKLRADRLGVGNDEFYLYPETDMTAIKKQ
IESLQPDFVVIDSVQTMQEPDVTSAIGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTASGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
IRSVADIESRLKEARKLGFKRAIVPKNNLNGVTLPEGIQVIGVATLREALQLALD

Nucleotide

• Length: 1368 bp

>NTDB_id=1035012 ACAF57_RS03945 WP_080973663.1 778756..780123(-) (radA) [Leuconostoc lactis strain PG-3]
ATCGCAAAAGTTAAAACACAATTTATTTGCTCAAACTGTGGTTTCACGTCAGCGCGCTATCTGGGTCGCTGCTCAAACTG
TGGTGAATGGGGCACATTTGTCGAAGAAAAAATTCTGCCAGATACCAACGATCGGAAAAGTCGGGTGAGCCTTGATGGTC
GTACGGCTAAGGTTGAAAAGATTAATGAGGTGACATCAGAGGAAACACCGCGTGTTGCCACGAACCTTAAAGAACTGAAC
CGCGTGTTAGGTGGTGGGGTGGTTCCAGGTTCAATGGTGTTGATTGGTGGGGATCCAGGCATTGGGAAATCAACTCTCTT
GCTCCAAGTCTCTGGGCAATTGGCCCATGAAGGTCGTGTGTTATACGTGACTGGGGAAGAATCTGCCACCCAAGTGAAGC
TACGGGCAGATCGTTTGGGTGTTGGGAATGATGAATTTTACCTCTATCCAGAAACAGATATGACGGCGATTAAAAAGCAA
ATTGAATCGCTGCAACCAGATTTTGTCGTGATTGACTCAGTACAAACGATGCAGGAACCAGACGTGACGTCCGCCATTGG
CTCCGTGTCACAAATCCGAGAAGTTACGGCAGATTTATTGCAAATTGCTAAAACCAATAACATTTCTATTTTTATCGTTG
GTCACGTGACTAAAGATGGGGCGATTGCTGGACCAAAGATTTTGGAGCATATGGTCGATACGGTGCTCTATTTTGAAGGT
GATAGTAACTATAAGTACCGTATTTTACGTGCGGTGAAAAATCGTTTTGGTGCCACCAATGAACTGGGTATTTTTGAAAT
GCGTGACGGCGGCTTGATTGAAGTCGCTAACCCATCAGAAATCTTTTTGGAAGAACGGTTAGCTGGGGCAACTGGGTCGG
CCATTGTGGTCGCCTTAGAAGGTTCACGCCCAATTTTGGTAGAGTTGCAAGCTTTGGTGACGCCCACCGTCTTTGGAAAT
GCGCAACGGACGGCATCCGGATTAGATCGTAACCGTGTGTCGTTAATAATGGCCGTTTTGGAAAAGCGCGCCAATCTCTT
GTTGCAAAATCAAGACGCTTATCTGAAAGCTGCCGGTGGGGTGAAACTGGATGAACCCGCAATTGATTTGGCGATTGCCG
TGGCGCTGGCCAGTTCTTATCACGATAAAGAATCGCGGCCAAGTGACGTCTTTGTCGGTGAAATTGGGTTAACTGGGGAA
ATCCGGAGTGTGGCTGATATTGAAAGTCGGTTGAAGGAGGCGCGCAAGCTTGGCTTTAAACGGGCGATTGTACCAAAGAA
TAACTTGAATGGGGTCACACTCCCTGAAGGGATTCAAGTAATTGGCGTCGCCACGTTACGGGAAGCGTTGCAATTAGCCT
TAGATTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (70-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (362-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	66.962	99.121	0.664
radA	Streptococcus pneumoniae D39	66.962	99.121	0.664
radA	Streptococcus pneumoniae R6	66.962	99.121	0.664
radA	Streptococcus pneumoniae TIGR4	66.962	99.121	0.664
radA	Streptococcus mitis NCTC 12261	66.741	99.121	0.662
radA	Streptococcus mitis SK321	66.741	99.121	0.662
radA	Bacillus subtilis subsp. subtilis str. 168	62.281	100	0.624