Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DG169_RS11115 Genome accession   NZ_LT992492
Coordinates   2372132..2372629 (-) Length   165 a.a.
NCBI ID   WP_000791199.1    Uniprot ID   A0A244CN63
Organism   Vibrio cholerae strain 4295STDY6534248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2367132..2377629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG169_RS11095 (SAMEA4374368_02168) - 2368636..2369565 (+) 930 WP_001271628.1 diguanylate cyclase -
  DG169_RS11100 (SAMEA4374368_02169) - 2369828..2370535 (-) 708 WP_000989527.1 hypothetical protein -
  DG169_RS11105 (SAMEA4374368_02170) - 2370626..2371699 (-) 1074 WP_001207588.1 primase-helicase zinc-binding domain-containing protein -
  DG169_RS11110 (SAMEA4374368_02171) - 2371791..2372132 (-) 342 WP_001014427.1 hypothetical protein -
  DG169_RS11115 (SAMEA4374368_02172) radC 2372132..2372629 (-) 498 WP_000791199.1 RadC family protein Machinery gene
  DG169_RS11120 (SAMEA4374368_02173) - 2372711..2374366 (-) 1656 WP_001016321.1 VWA domain-containing protein -
  DG169_RS11125 (SAMEA4374368_02174) - 2374436..2374876 (-) 441 WP_001192020.1 hypothetical protein -
  DG169_RS11130 (SAMEA4374368_02175) - 2374938..2375891 (-) 954 WP_000027442.1 DUF3150 domain-containing protein -
  DG169_RS11135 (SAMEA4374368_02176) - 2375990..2376757 (-) 768 WP_000970192.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18514.21 Da        Isoelectric Point: 6.6094

>NTDB_id=1034992 DG169_RS11115 WP_000791199.1 2372132..2372629(-) (radC) [Vibrio cholerae strain 4295STDY6534248]
MKNKKFLAGEEAGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNAAAVILVHNHPSGDPEPSEADKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1034992 DG169_RS11115 WP_000791199.1 2372132..2372629(-) (radC) [Vibrio cholerae strain 4295STDY6534248]
ATGAAAAACAAAAAATTCTTAGCTGGCGAAGAAGCCGGTACTTACATCGTTCCTGAGCAGGTGACCGAAGCCGATATATT
AGATATGGCGCTCAAGCTTGCTCGTGGTCGATTGAGTAAAGGTCGCAAAATTGAACAGCCATCGTCGGCGTTCTCATACC
TGCAAACACTGATGCACGAGTATGAGCACGAAGTCTTTGGAGTGCTGTTTCTTGATACAAAGCATCGCGTTATTCGATTT
GAAGAGCTGTTCAAAGGCACTTTAGATGCGGCGAGCGTGTATCCAAGGGAAGTAACAAAGCGTGCGCTAGAGCTTAATGC
GGCAGCAGTGATACTGGTTCATAACCATCCATCGGGTGATCCTGAACCTAGTGAAGCTGATAAACGCATCACTCATCGAC
TCCGTGACGCCTTGTCACTTGTTGATATTCGAACGCTTGACCATGTTGTGGTCGCATCCGAGGGCTGCGTTTCGCTTGCC
GAACGCGGTTATCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A244CN63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

73.939

0.37

Multiple sequence alignment