Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HUW69_RS08600 Genome accession   NZ_LT992490
Coordinates   1920759..1921361 (-) Length   200 a.a.
NCBI ID   WP_084998664.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1915759..1926361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS08575 (SAMEA4374365_01746) - 1916455..1917612 (-) 1158 WP_000834939.1 patatin family protein -
  HUW69_RS08580 (SAMEA4374365_01747) - 1917631..1917720 (-) 90 WP_000434305.1 YnhF family membrane protein -
  HUW69_RS08585 (SAMEA4374365_01748) - 1917856..1918446 (+) 591 WP_001248975.1 porin family protein -
  HUW69_RS08590 (SAMEA4374365_01749) - 1918952..1920409 (+) 1458 WP_000817999.1 sodium-dependent transporter -
  HUW69_RS08595 - 1920412..1920513 (+) 102 WP_113593221.1 MetS family NSS transporter small subunit -
  HUW69_RS08600 (SAMEA4374365_01750) recR 1920759..1921361 (-) 603 WP_084998664.1 recombination mediator RecR Machinery gene
  HUW69_RS08605 (SAMEA4374365_01751) - 1921376..1921705 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  HUW69_RS08610 (SAMEA4374365_01752) dnaX 1921776..1923860 (-) 2085 WP_002031773.1 DNA polymerase III subunit gamma/tau -
  HUW69_RS08615 (SAMEA4374365_01753) apt 1923879..1924424 (-) 546 WP_000206217.1 adenine phosphoribosyltransferase -
  HUW69_RS08620 (SAMEA4374365_01754) - 1924560..1924958 (-) 399 WP_001889904.1 YbaN family protein -
  HUW69_RS19720 (SAMEA4374365_01755) - 1924958..1925089 (-) 132 WP_000013198.1 hypothetical protein -
  HUW69_RS08625 (SAMEA4374365_01756) - 1925259..1926353 (-) 1095 WP_174566525.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21809.94 Da        Isoelectric Point: 6.3267

>NTDB_id=1034897 HUW69_RS08600 WP_084998664.1 1920759..1921361(-) (recR) [Vibrio cholerae strain 4295STDY6534200]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALNQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGGISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1034897 HUW69_RS08600 WP_084998664.1 1920759..1921361(-) (recR) [Vibrio cholerae strain 4295STDY6534200]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCGCTGAATCAGGCAATGGTCGAAA
TCGGTCATTGTCAGGAGTGCCGAACCTTTACCGAGCAGGATGTTTGTCACATCTGTAGCAATCCTAAGCGTAAAGAAAAT
GGTCAGCTTTGTGTGGTTGAAAGCCCAGCAGACATTGCGGCGCTAGAAGCTACTGGTCAGTTCTCTGGTCGCTATTTTGT
GTTGATGGGACACCTATCACCGCTGGATGGTATTGGCCCGAGCGATATTGGTCTTGATACTCTAGATTATCGTTTGCAGC
GTGGTGGTATCAGTGAGGTTATCCTCGCTACCAACCCGACGGTGGAAGGGGAAGCGACCGCACAATACATTGCTGAATTG
TGTCGTGAGCATCAAGTCACGGCCAGTCGTATCGCTCACGGAGTACCGGTCGGCGGTGAGCTAGAGTTGGTGGATGGTAC
GACCTTATCCCATTCGCTGTTGGGTCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44

Multiple sequence alignment