Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DG176_RS12180 Genome accession   NZ_LT992488
Coordinates   2601628..2602101 (+) Length   157 a.a.
NCBI ID   WP_001068477.1    Uniprot ID   Q9KUK8
Organism   Vibrio cholerae strain 4295STDY6534232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596628..2607101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG176_RS12170 (SAMEA4374367_02379) - 2598725..2600302 (-) 1578 WP_001230753.1 methyl-accepting chemotaxis protein -
  DG176_RS19860 (SAMEA4374367_02380) - 2600723..2601001 (-) 279 WP_001883330.1 hypothetical protein -
  DG176_RS12180 (SAMEA4374367_02381) radC 2601628..2602101 (+) 474 WP_001068477.1 RadC family protein Machinery gene
  DG176_RS12185 (SAMEA4374367_02382) - 2602098..2602535 (+) 438 WP_000572493.1 DUF2787 domain-containing protein -
  DG176_RS12190 (SAMEA4374367_02383) - 2602586..2603029 (+) 444 WP_000041081.1 DUF2787 domain-containing protein -
  DG176_RS12200 (SAMEA4374367_02384) - 2603348..2604082 (+) 735 WP_000066839.1 WYL domain-containing protein -
  DG176_RS12205 (SAMEA4374367_02385) - 2604113..2604481 (+) 369 WP_000176666.1 hypothetical protein -
  DG176_RS12210 (SAMEA4374367_02386) - 2604529..2604756 (+) 228 WP_000749780.1 hypothetical protein -
  DG176_RS12215 (SAMEA4374367_02387) - 2604934..2606214 (-) 1281 WP_001883323.1 peptidoglycan DD-metalloendopeptidase family protein -
  DG176_RS12220 - 2606436..2606636 (+) 201 WP_001883322.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17808.04 Da        Isoelectric Point: 5.2964

>NTDB_id=1034830 DG176_RS12180 WP_001068477.1 2601628..2602101(+) (radC) [Vibrio cholerae strain 4295STDY6534232]
MNPKTSEYQKQQRYQENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDTLALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1034830 DG176_RS12180 WP_001068477.1 2601628..2602101(+) (radC) [Vibrio cholerae strain 4295STDY6534232]
ATGAATCCCAAAACTTCCGAGTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAGATACT
AGCTAACCGCTACGTGCGTGGCGATGCCCTAACCAATCCTGATGCCACCAAAGAGTATGTACGCTGTAAGCTAGGCAGCT
ATGAACGTGAAGTGTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCAAGGAACG
GTGGATGCGGCCAGCGTTTACCCGCGAGAAGTGGTGAAAGCGGTGTTAGAAGTGAATGCCGCAGCAGTGATATTTGCCCA
TAACCATCCATCTGGAGACTCAACACCATCTCAAGCCGATAGACGAATAACAGAAAGACTCAAAGATACTTTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.255

87.261

0.395