Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABK045_RS19975 Genome accession   NZ_CP166498
Coordinates   4305308..4305709 (-) Length   133 a.a.
NCBI ID   WP_005418455.1    Uniprot ID   -
Organism   Stenotrophomonas pavanii strain 9978     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4300308..4310709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK045_RS19960 (ABK045_19975) - 4302319..4304355 (-) 2037 WP_049468083.1 methyl-accepting chemotaxis protein -
  ABK045_RS19965 (ABK045_19980) - 4304397..4304927 (-) 531 WP_049468081.1 chemotaxis protein CheW -
  ABK045_RS19970 (ABK045_19985) - 4304927..4305289 (-) 363 WP_005410717.1 PleD family two-component system response regulator -
  ABK045_RS19975 (ABK045_19990) pilG 4305308..4305709 (-) 402 WP_005418455.1 twitching motility response regulator PilG Regulator
  ABK045_RS19980 (ABK045_19995) gshB 4305950..4306897 (+) 948 WP_064239040.1 glutathione synthase -
  ABK045_RS19985 (ABK045_20000) - 4306897..4307781 (+) 885 WP_053461113.1 energy transducer TonB -
  ABK045_RS19990 (ABK045_20005) tsaB 4308430..4309143 (-) 714 WP_064239041.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14657.98 Da        Isoelectric Point: 6.3483

>NTDB_id=1034800 ABK045_RS19975 WP_005418455.1 4305308..4305709(-) (pilG) [Stenotrophomonas pavanii strain 9978]
MTENTTAGGELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKATPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLGAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1034800 ABK045_RS19975 WP_005418455.1 4305308..4305709(-) (pilG) [Stenotrophomonas pavanii strain 9978]
ATGACTGAAAACACGACTGCGGGCGGGGAACTCGCAGGACTCCGGGTGATGGTCATCGATGATTCGAAGACCATCCGCAG
GACTGCGGAAACGCTGCTCAAGCGCGAAGGCTGCGAGGTGGTCACCGCCACCGACGGCTTCGAAGCGCTTGCCAAGATCG
CAGACCAGCAACCGCAGATCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACCTGTGCGCTGATCAAG
GGCAACCAGCTGTTCAAGGCGACCCCGGTGATCATGCTGTCATCCAAGGATGGTCTGTTCGACAAGGCGCGGGGGCGCAT
CGTCGGCTCGGAGCAATACCTGACCAAGCCTTTCACGCGCGAAGAACTGCTGGGTGCCATCCGCACATACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677

Multiple sequence alignment