Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB6K15_RS10420 Genome accession   NZ_CP166492
Coordinates   2172812..2173330 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain BC248L1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2167812..2178330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS10400 (AB6K15_10405) - 2168890..2169096 (+) 207 WP_012118942.1 DUF951 domain-containing protein -
  AB6K15_RS10405 (AB6K15_10410) - 2169143..2171146 (+) 2004 WP_038464550.1 molybdopterin-dependent oxidoreductase -
  AB6K15_RS10410 (AB6K15_10415) ychF 2171273..2172373 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  AB6K15_RS10415 (AB6K15_10420) rpsF 2172485..2172772 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  AB6K15_RS10420 (AB6K15_10425) ssbA 2172812..2173330 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB6K15_RS10425 (AB6K15_10430) rpsR 2173374..2173613 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  AB6K15_RS10430 (AB6K15_10435) - 2173804..2174385 (+) 582 WP_124935070.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AB6K15_RS10435 (AB6K15_10440) - 2174382..2174939 (+) 558 WP_197200228.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AB6K15_RS10440 (AB6K15_10445) xth 2174936..2175694 (+) 759 WP_100001698.1 exodeoxyribonuclease III -
  AB6K15_RS10445 (AB6K15_10450) - 2175757..2176695 (+) 939 WP_012118935.1 LacI family DNA-binding transcriptional regulator -
  AB6K15_RS10450 (AB6K15_10455) - 2176752..2177132 (+) 381 WP_012118934.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1034744 AB6K15_RS10420 WP_004392979.1 2172812..2173330(+) (ssbA) [Bacillus velezensis strain BC248L1-1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1034744 AB6K15_RS10420 WP_004392979.1 2172812..2173330(+) (ssbA) [Bacillus velezensis strain BC248L1-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment