Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB6K15_RS08545 Genome accession   NZ_CP166492
Coordinates   1821783..1822220 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain BC248L1-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1816783..1827220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS08530 (AB6K15_08545) - 1819641..1820003 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  AB6K15_RS08535 (AB6K15_08550) hxlA 1820235..1820870 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  AB6K15_RS08540 (AB6K15_08555) hxlB 1820867..1821424 (+) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  AB6K15_RS08545 (AB6K15_08560) nucA/comI 1821783..1822220 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB6K15_RS08550 (AB6K15_08565) nin/comJ 1822241..1822639 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  AB6K15_RS08555 (AB6K15_08570) - 1822680..1824116 (-) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  AB6K15_RS08560 (AB6K15_08575) - 1824220..1824498 (-) 279 WP_263612330.1 YckD family protein -
  AB6K15_RS08565 (AB6K15_08580) - 1824616..1825050 (-) 435 WP_094031491.1 RDD family protein -
  AB6K15_RS08570 (AB6K15_08585) - 1825065..1826201 (-) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1034736 AB6K15_RS08545 WP_003156588.1 1821783..1822220(+) (nucA/comI) [Bacillus velezensis strain BC248L1-1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1034736 AB6K15_RS08545 WP_003156588.1 1821783..1822220(+) (nucA/comI) [Bacillus velezensis strain BC248L1-1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment