Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB6K15_RS04950 Genome accession   NZ_CP166492
Coordinates   1106303..1106881 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BC248L1-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101303..1111881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6K15_RS04915 (AB6K15_04920) - 1101489..1102958 (+) 1470 WP_015239531.1 sodium:solute symporter -
  AB6K15_RS04920 (AB6K15_04925) - 1103000..1103317 (+) 318 WP_003155166.1 YbjQ family protein -
  AB6K15_RS04925 (AB6K15_04930) - 1103350..1103619 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  AB6K15_RS04930 (AB6K15_04935) - 1103815..1104525 (+) 711 WP_061046917.1 YrpD family protein -
  AB6K15_RS04935 (AB6K15_04940) - 1104759..1105268 (-) 510 WP_061046918.1 MepB family protein -
  AB6K15_RS04940 (AB6K15_04945) - 1105391..1105762 (-) 372 WP_061046919.1 iron chaperone -
  AB6K15_RS04945 (AB6K15_04950) - 1105789..1106157 (-) 369 WP_061046920.1 iron chaperone -
  AB6K15_RS04950 (AB6K15_04955) comK 1106303..1106881 (-) 579 WP_003155179.1 competence protein ComK Regulator
  AB6K15_RS04955 (AB6K15_04960) - 1107197..1107430 (+) 234 WP_007409189.1 IDEAL domain-containing protein -
  AB6K15_RS04960 (AB6K15_04965) - 1107460..1108317 (-) 858 WP_032871127.1 SDR family oxidoreductase -
  AB6K15_RS04965 (AB6K15_04970) - 1108442..1109965 (+) 1524 WP_094031628.1 FAD-dependent oxidoreductase -
  AB6K15_RS04970 - 1110198..1110572 (+) 375 Protein_990 protoglobin domain-containing protein -
  AB6K15_RS04975 - 1110582..1111379 (+) 798 WP_371265894.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1034726 AB6K15_RS04950 WP_003155179.1 1106303..1106881(-) (comK) [Bacillus velezensis strain BC248L1-1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1034726 AB6K15_RS04950 WP_003155179.1 1106303..1106881(-) (comK) [Bacillus velezensis strain BC248L1-1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment