Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DG247_RS05230 Genome accession   NZ_LT992486
Coordinates   1090095..1090709 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain 4295STDY6534216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085095..1095709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG247_RS05205 (SAMEA4374366_01018) - 1085279..1086493 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  DG247_RS05210 (SAMEA4374366_01019) lpxH 1086589..1087329 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  DG247_RS05215 (SAMEA4374366_01020) - 1087370..1087864 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  DG247_RS05220 (SAMEA4374366_01021) cysS 1088010..1089389 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  DG247_RS05225 (SAMEA4374366_01022) ruvC 1089477..1089998 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  DG247_RS05230 (SAMEA4374366_01023) ruvA 1090095..1090709 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  DG247_RS05235 (SAMEA4374366_01024) ruvB 1090765..1091769 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DG247_RS05240 (SAMEA4374366_01026) cydA 1092228..1093814 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  DG247_RS05245 (SAMEA4374366_01027) cydB 1093832..1094968 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  DG247_RS05250 (SAMEA4374366_01028) cydX 1094981..1095088 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  DG247_RS05255 ybgE 1095081..1095398 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=1034709 DG247_RS05230 WP_000580359.1 1090095..1090709(+) (ruvA) [Vibrio cholerae strain 4295STDY6534216]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1034709 DG247_RS05230 WP_000580359.1 1090095..1090709(+) (ruvA) [Vibrio cholerae strain 4295STDY6534216]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment