Detailed information NTG1034704

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB6911_RS19550
• Genome accession: NZ_CP166481
• Coordinates: 3815332..3816474 (+)
• Length: 380 a.a.
• NCBI ID: WP_003326491.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain globigii
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3810332..3821474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6911_RS19530 (AB6911_19500)	-	3810798..3811499 (+)	702	WP_003326495.1	bacteriocin biosynthesis protein AlbG	-
AB6911_RS19535 (AB6911_19505)	-	3811506..3812882 (-)	1377	WP_003326494.1	YncE family protein	-
AB6911_RS19540 (AB6911_19510)	-	3812923..3814284 (-)	1362	WP_003326493.1	YncE family protein	-
AB6911_RS19545 (AB6911_19515)	-	3814567..3815121 (+)	555	WP_003326492.1	YdhK family protein	-
AB6911_RS19550 (AB6911_19520)	rapF	3815332..3816474 (+)	1143	WP_003326491.1	tetratricopeptide repeat protein	Regulator
AB6911_RS19555 (AB6911_19525)	-	3816458..3816577 (+)	120	WP_003326489.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
AB6911_RS19560 (AB6911_19530)	-	3816677..3816865 (+)	189	Protein_3802	YbaK/EbsC family protein	-
AB6911_RS19565 (AB6911_19535)	speB	3816925..3817797 (-)	873	WP_003326487.1	agmatinase	-
AB6911_RS19570 (AB6911_19540)	speE	3817858..3818688 (-)	831	WP_003326486.1	spermidine synthase	-
AB6911_RS19575 (AB6911_19545)	-	3818893..3820968 (+)	2076	WP_003326485.1	transglycosylase domain-containing protein	-
AB6911_RS19580 (AB6911_19550)	-	3821015..3821161 (-)	147	WP_003326484.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45457.24 Da
• Isoelectric Point: 5.2528

>NTDB_id=1034704 AB6911_RS19550 WP_003326491.1 3815332..3816474(+) (rapF) [Bacillus atrophaeus strain globigii]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDNVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1143 bp

>NTDB_id=1034704 AB6911_RS19550 WP_003326491.1 3815332..3816474(+) (rapF) [Bacillus atrophaeus strain globigii]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAAGAACAGCCGCGACTG
TCCGATTTACTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCAGCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAACCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACAATGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.803
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	100	0.568