Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB6911_RS14590 Genome accession   NZ_CP166481
Coordinates   2837032..2837778 (-) Length   248 a.a.
NCBI ID   WP_003325235.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2832032..2842778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS14565 (AB6911_14545) mreC 2832428..2833300 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  AB6911_RS14570 (AB6911_14550) mreB 2833331..2834344 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  AB6911_RS14575 (AB6911_14555) radC 2834436..2835131 (-) 696 WP_003325238.1 DNA repair protein RadC -
  AB6911_RS14580 (AB6911_14560) - 2835166..2835735 (-) 570 WP_003325237.1 nucleoside triphosphate pyrophosphatase -
  AB6911_RS14585 (AB6911_14565) - 2835882..2836898 (-) 1017 WP_003325236.1 SPOR domain-containing protein -
  AB6911_RS14590 (AB6911_14570) comC 2837032..2837778 (-) 747 WP_003325235.1 A24 family peptidase Machinery gene
  AB6911_RS14595 (AB6911_14575) - 2837932..2839227 (-) 1296 WP_003325234.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB6911_RS14600 (AB6911_14580) valS 2839285..2841927 (-) 2643 WP_013390613.1 valine--tRNA ligase -
  AB6911_RS14605 (AB6911_14585) - 2842374..2842565 (+) 192 WP_003325232.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26768.46 Da        Isoelectric Point: 9.1068

>NTDB_id=1034687 AB6911_RS14590 WP_003325235.1 2837032..2837778(-) (comC) [Bacillus atrophaeus strain globigii]
MVLVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRNPLSYTELIPVFSFFLQKGRCKSCSQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILA
LYVKMAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1034687 AB6911_RS14590 WP_003325235.1 2837032..2837778(-) (comC) [Bacillus atrophaeus strain globigii]
ATGGTTTTAGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTATAAAACCGCGCTCATCCTGTTCATTTTGCCGCAATCCGTTGTCTTATACTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCCGATGTAAAAGCTGTTCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTTCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGTTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCTCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATCTGTACGGTGAAGAAATATTAGCA
CTCTATGTCAAAATGGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.943

99.597

0.617

Multiple sequence alignment