Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB6911_RS13185 Genome accession   NZ_CP166481
Coordinates   2587744..2589474 (-) Length   576 a.a.
NCBI ID   WP_003325482.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2582744..2594474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS13165 (AB6911_13145) - 2582879..2583997 (+) 1119 WP_003325486.1 NADH-dependent flavin oxidoreductase -
  AB6911_RS13170 (AB6911_13150) - 2584163..2585020 (+) 858 WP_003325485.1 manganese catalase family protein -
  AB6911_RS13175 (AB6911_13155) spo0A 2585188..2585985 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  AB6911_RS13180 (AB6911_13160) spoIVB 2586269..2587549 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  AB6911_RS13185 (AB6911_13165) recN 2587744..2589474 (-) 1731 WP_003325482.1 DNA repair protein RecN Machinery gene
  AB6911_RS13190 (AB6911_13170) argR 2589509..2589958 (-) 450 WP_003325480.1 arginine repressor ArgR -
  AB6911_RS13195 (AB6911_13175) - 2590057..2590902 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -
  AB6911_RS13200 (AB6911_13180) dxs 2590899..2592800 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB6911_RS13205 (AB6911_13185) - 2593008..2593898 (-) 891 WP_003325477.1 polyprenyl synthetase family protein -
  AB6911_RS13210 (AB6911_13190) - 2593888..2594142 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64490.24 Da        Isoelectric Point: 4.7139

>NTDB_id=1034669 AB6911_RS13185 WP_003325482.1 2587744..2589474(-) (recN) [Bacillus atrophaeus strain globigii]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSNGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1034669 AB6911_RS13185 WP_003325482.1 2587744..2589474(-) (recN) [Bacillus atrophaeus strain globigii]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAACGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGCTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGTTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGAAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCTGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTTTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATATGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTTGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCAGGATGATTGCCGGAGTCGAGGTGACCGATCTGACGAAACGG
CATGCGAAAGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.104

100

0.901

Multiple sequence alignment