Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB6911_RS11790 Genome accession   NZ_CP166481
Coordinates   2346716..2347324 (+) Length   202 a.a.
NCBI ID   WP_003325648.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2341716..2352324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS11750 (AB6911_11720) - 2342825..2343331 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  AB6911_RS11755 (AB6911_11725) - 2343481..2343900 (+) 420 WP_003325656.1 Hsp20/alpha crystallin family protein -
  AB6911_RS11760 (AB6911_11730) - 2343920..2344309 (-) 390 WP_003325655.1 YppG family protein -
  AB6911_RS11765 (AB6911_11735) - 2344499..2344687 (+) 189 WP_003325653.1 YppF family protein -
  AB6911_RS11770 (AB6911_11740) - 2344718..2345092 (-) 375 WP_003325652.1 YppE family protein -
  AB6911_RS11775 (AB6911_11745) - 2345134..2345379 (-) 246 WP_003325651.1 DUF5446 family protein -
  AB6911_RS11780 (AB6911_11750) sspM 2345580..2345684 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  AB6911_RS11785 (AB6911_11755) - 2345711..2346673 (-) 963 WP_087941807.1 DUF2515 domain-containing protein -
  AB6911_RS11790 (AB6911_11760) recU 2346716..2347324 (+) 609 WP_003325648.1 Holliday junction resolvase RecU Machinery gene
  AB6911_RS11795 (AB6911_11765) - 2347362..2350115 (+) 2754 WP_003325647.1 PBP1A family penicillin-binding protein -
  AB6911_RS11800 (AB6911_11770) - 2350207..2350698 (-) 492 WP_003325646.1 YpoC family protein -
  AB6911_RS11805 (AB6911_11775) nth 2350695..2351354 (-) 660 WP_003325645.1 endonuclease III -
  AB6911_RS11810 (AB6911_11780) dnaD 2351373..2352071 (-) 699 WP_003325644.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.96 Da        Isoelectric Point: 9.9112

>NTDB_id=1034667 AB6911_RS11790 WP_003325648.1 2346716..2347324(+) (recU) [Bacillus atrophaeus strain globigii]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEKLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1034667 AB6911_RS11790 WP_003325648.1 2346716..2347324(+) (recU) [Bacillus atrophaeus strain globigii]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAAAAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.05

99.505

0.896

Multiple sequence alignment