Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB6911_RS06525 Genome accession   NZ_CP166481
Coordinates   1286063..1286488 (+) Length   141 a.a.
NCBI ID   WP_003327514.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1281063..1291488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS06500 (AB6911_06480) - 1281225..1283135 (+) 1911 WP_003327519.1 right-handed parallel beta-helix repeat-containing protein -
  AB6911_RS06505 (AB6911_06485) - 1283147..1283434 (+) 288 WP_228370114.1 hypothetical protein -
  AB6911_RS06510 (AB6911_06490) - 1283764..1283910 (-) 147 WP_080288976.1 FCD domain-containing protein -
  AB6911_RS06515 (AB6911_06495) - 1285205..1285534 (-) 330 WP_003327517.1 hypothetical protein -
  AB6911_RS06520 (AB6911_06500) - 1285594..1285872 (-) 279 WP_003327515.1 hypothetical protein -
  AB6911_RS06525 (AB6911_06505) nucA/comI 1286063..1286488 (+) 426 WP_003327514.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB6911_RS06530 (AB6911_06510) - 1286636..1287298 (+) 663 WP_003327513.1 MgtC/SapB family protein -
  AB6911_RS06535 (AB6911_06515) - 1287357..1287596 (-) 240 WP_003327512.1 hypothetical protein -
  AB6911_RS06540 (AB6911_06520) - 1287809..1288021 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AB6911_RS06545 (AB6911_06525) - 1288081..1288296 (-) 216 WP_072053284.1 spore coat protein -
  AB6911_RS06550 (AB6911_06530) - 1288611..1290011 (+) 1401 WP_003327508.1 polysaccharide deacetylase family protein -
  AB6911_RS06555 (AB6911_06535) - 1290064..1290536 (-) 473 Protein_1236 YjfA family protein -
  AB6911_RS06560 (AB6911_06540) - 1290668..1291078 (-) 411 WP_003327506.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15363.18 Da        Isoelectric Point: 4.7462

>NTDB_id=1034656 AB6911_RS06525 WP_003327514.1 1286063..1286488(+) (nucA/comI) [Bacillus atrophaeus strain globigii]
MKKWITSLFLIAAILFGLMGAEVYASQDVKGASRYDQVLYFPFSRYPETGDHIKDAVAAGHSDVCTIDRAGADERREESL
KGVPTKPGYDRDEWPMAVCEEGGTGADIRYVTPSDNRGAGSSVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1034656 AB6911_RS06525 WP_003327514.1 1286063..1286488(+) (nucA/comI) [Bacillus atrophaeus strain globigii]
ATGAAAAAATGGATCACGAGCTTATTTCTGATCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTTCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTTCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGGTAGCGGCCGGACATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGGTTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGCGAAGAAGGCGGGACCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATCGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

89.362

0.525

Multiple sequence alignment