Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB6911_RS05720 Genome accession   NZ_CP166481
Coordinates   1141616..1142191 (+) Length   191 a.a.
NCBI ID   WP_003327695.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1136616..1147191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS05695 - 1137045..1137560 (-) 516 WP_370499821.1 methyl-accepting chemotaxis protein -
  AB6911_RS05700 - 1137849..1138226 (-) 378 Protein_1066 protoglobin domain-containing protein -
  AB6911_RS05705 (AB6911_05690) - 1138502..1140094 (-) 1593 WP_206699531.1 FAD-dependent oxidoreductase -
  AB6911_RS05710 (AB6911_05695) - 1140168..1141025 (+) 858 WP_003327697.1 SDR family oxidoreductase -
  AB6911_RS05715 (AB6911_05700) - 1141056..1141289 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  AB6911_RS05720 (AB6911_05705) comK 1141616..1142191 (+) 576 WP_003327695.1 competence protein ComK Regulator
  AB6911_RS05725 (AB6911_05710) - 1142409..1142681 (+) 273 WP_003327694.1 excalibur calcium-binding domain-containing protein -
  AB6911_RS05730 (AB6911_05715) - 1142708..1144195 (-) 1488 WP_003327693.1 sodium:solute symporter -
  AB6911_RS05735 (AB6911_05720) - 1144192..1144392 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  AB6911_RS05740 (AB6911_05725) - 1144520..1144885 (-) 366 WP_003327690.1 hypothetical protein -
  AB6911_RS05745 (AB6911_05730) - 1145040..1145663 (+) 624 WP_034718039.1 TVP38/TMEM64 family protein -
  AB6911_RS05750 (AB6911_05735) lepB 1145666..1146166 (+) 501 WP_003327688.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22280.52 Da        Isoelectric Point: 8.1215

>NTDB_id=1034647 AB6911_RS05720 WP_003327695.1 1141616..1142191(+) (comK) [Bacillus atrophaeus strain globigii]
MSQKTDALLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1034647 AB6911_RS05720 WP_003327695.1 1141616..1142191(+) (comK) [Bacillus atrophaeus strain globigii]
ATGAGTCAGAAAACTGACGCACTCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCAACAAGACCCCAATGCGGCTGGATATCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

86.979

100

0.874

Multiple sequence alignment