Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DXE38_RS06480 Genome accession   NZ_LT992477
Coordinates   1275707..1276552 (-) Length   281 a.a.
NCBI ID   WP_001825659.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 22_LA_562     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270707..1281552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE38_RS15070 - 1270962..1271238 (+) 277 Protein_1208 site-specific integrase -
  DXE38_RS15285 - 1271231..1271458 (+) 228 Protein_1209 Abi family protein -
  DXE38_RS06440 rpsR 1271695..1271937 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  DXE38_RS06445 ssbA 1271989..1272492 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  DXE38_RS06450 rpsF 1272513..1272809 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  DXE38_RS06460 - 1273053..1273244 (+) 192 WP_001052481.1 hypothetical protein -
  DXE38_RS06465 ychF 1273330..1274427 (-) 1098 WP_001218731.1 redox-regulated ATPase YchF -
  DXE38_RS06470 - 1274439..1274642 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  DXE38_RS06475 - 1274672..1275553 (-) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  DXE38_RS06480 spo0J 1275707..1276552 (-) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein Regulator
  DXE38_RS06490 - 1277216..1278319 (+) 1104 WP_000655690.1 PLP-dependent transferase -
  DXE38_RS06495 metC 1278316..1279476 (+) 1161 WP_000175863.1 cystathionine beta-lyase MetC -
  DXE38_RS06500 - 1279445..1281286 (+) 1842 WP_000077324.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.86 Da        Isoelectric Point: 10.0554

>NTDB_id=1034643 DXE38_RS06480 WP_001825659.1 1275707..1276552(-) (spo0J) [Staphylococcus aureus isolate 22_LA_562]
MSELSKSEDQRITKTKDEQIKKIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=1034643 DXE38_RS06480 WP_001825659.1 1275707..1276552(-) (spo0J) [Staphylococcus aureus isolate 22_LA_562]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGAAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTAAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAGGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381