Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB6911_RS01975 Genome accession   NZ_CP166481
Coordinates   382512..382949 (-) Length   145 a.a.
NCBI ID   WP_003328076.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 377512..387949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS01940 (AB6911_01935) - 378086..378541 (+) 456 WP_013390750.1 RDD family protein -
  AB6911_RS01945 (AB6911_01940) - 378626..378955 (+) 330 WP_003328069.1 YckD family protein -
  AB6911_RS01950 (AB6911_01945) - 379059..379484 (+) 426 WP_003328070.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB6911_RS01955 (AB6911_01950) - 379472..379813 (+) 342 WP_013390751.1 DUF3147 family protein -
  AB6911_RS01960 (AB6911_01955) - 379833..380552 (+) 720 WP_003328073.1 AAA family ATPase -
  AB6911_RS01965 (AB6911_01960) - 380622..382058 (+) 1437 WP_003328074.1 glycoside hydrolase family 1 protein -
  AB6911_RS01970 (AB6911_01965) nin/comJ 382095..382493 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  AB6911_RS01975 (AB6911_01970) nucA/comI 382512..382949 (-) 438 WP_003328076.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB6911_RS01980 - 383171..384121 (-) 951 WP_370499806.1 methyl-accepting chemotaxis protein -
  AB6911_RS01985 - 384332..384874 (-) 543 Protein_357 cache domain-containing protein -
  AB6911_RS01990 (AB6911_01980) hxlB 385004..385561 (-) 558 WP_013390752.1 6-phospho-3-hexuloisomerase -
  AB6911_RS01995 (AB6911_01985) hxlA 385568..386200 (-) 633 WP_003328079.1 3-hexulose-6-phosphate synthase -
  AB6911_RS02000 (AB6911_01990) - 386419..386784 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15947.73 Da        Isoelectric Point: 4.1969

>NTDB_id=1034636 AB6911_RS01975 WP_003328076.1 382512..382949(-) (nucA/comI) [Bacillus atrophaeus strain globigii]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEARR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1034636 AB6911_RS01975 WP_003328076.1 382512..382949(-) (nucA/comI) [Bacillus atrophaeus strain globigii]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGCACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814

Multiple sequence alignment