Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AB6911_RS00020 Genome accession   NZ_CP166481
Coordinates   3027..4139 (+) Length   370 a.a.
NCBI ID   WP_003326033.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain globigii     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6911_RS00005 (AB6911_00005) dnaA 1..1341 (+) 1341 WP_003326038.1 chromosomal replication initiator protein DnaA -
  AB6911_RS00010 (AB6911_00010) dnaN 1523..2659 (+) 1137 WP_003326036.1 DNA polymerase III subunit beta -
  AB6911_RS00015 (AB6911_00015) rlbA 2796..3011 (+) 216 WP_003326035.1 ribosome maturation protein RlbA -
  AB6911_RS00020 (AB6911_00020) recF 3027..4139 (+) 1113 WP_003326033.1 DNA replication/repair protein RecF Machinery gene
  AB6911_RS00025 (AB6911_00025) remB 4157..4402 (+) 246 WP_003326032.1 extracellular matrix regulator RemB -
  AB6911_RS00030 (AB6911_00030) gyrB 4459..6375 (+) 1917 WP_003326031.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB6911_RS00035 (AB6911_00035) gyrA 6603..9068 (+) 2466 WP_010790566.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.53 Da        Isoelectric Point: 7.6570

>NTDB_id=1034629 AB6911_RS00020 WP_003326033.1 3027..4139(+) (recF) [Bacillus atrophaeus strain globigii]
MYIQNLELTSYRNYERVELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGS
IPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQR
NHFLKQLQSRKQTDQTMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDLSKI
GDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1034629 AB6911_RS00020 WP_003326033.1 3027..4139(+) (recF) [Bacillus atrophaeus strain globigii]
TTGTATATCCAAAATTTGGAATTAACGTCTTATCGTAATTACGAGCGTGTTGAACTTCAATTTGAAAATAAAGTGAATGT
CATCATCGGTGAGAACGCTCAAGGGAAGACAAATCTCATGGAAGCGATCTATGTTTTGTCGATGGCGAAATCACATCGCA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGTCG
ATCCCGATGCAGCTTGTCATTTCCAAGAAGGGGAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTGAGCCGGTA
TGTAGGAGCGCTGAATACAATTATGTTCGCGCCCGAGGACTTAAATCTCGTAAAGGGCAGCCCGCAAGTAAGACGGCGGT
TTCTTGACATGGAAATCGGCCAGGTATCTCCAGTCTATTTGTACGATCTTTCTCTGTACCAGAAAATTCTTACGCAAAGA
AATCATTTTTTGAAACAGCTGCAAAGCAGGAAACAGACTGACCAGACAATGCTCGACGTTCTGACTGAACAGCTGATCGA
GACAGCTGCAAAGGTTGTCGTAAAACGCCTGCAATTTACAGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGAA
TTTCAAGAGGGCTTGAAGAACTGACGCTGAAGTATCAGACGGCTCTTGAGGTATCAGATCCCGAAGACTTGTCGAAAATA
GGAGATAGTTACCAAAGGGCGTTTTCAAAGCTAAGAGAAAAAGAAATTGAGCGTGGTGTAACGCTGTCAGGACCTCATCG
GGATGATGTTCTTTTTTATGTGAACGGACGCGATGTGCAAACATATGGTTCTCAGGGGCAGCAGCGGACAACGGCATTGT
CACTCAAGCTGGCGGAAATTGACTTGATTCATGAAGAAATCGGAGAATACCCTATCTTACTTTTGGATGATGTGCTGAGT
GAGCTGGATGACTATCGGCAGTCGCATTTGCTTCATACGATCCAAGGCCGTGTTCAAACGTTTGTCACTACGACAAGTGT
AGATGGCATTGATCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

95.135

100

0.951

Multiple sequence alignment