Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB9X52_RS19745 Genome accession   NZ_CP166433
Coordinates   4139522..4140955 (+) Length   477 a.a.
NCBI ID   WP_003861864.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 2024CK-00699     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4134522..4145955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9X52_RS19715 (AB9X52_19710) - 4135089..4136066 (+) 978 WP_148386362.1 calcium/sodium antiporter -
  AB9X52_RS19720 (AB9X52_19715) kdsD 4136080..4137066 (+) 987 WP_375602020.1 arabinose-5-phosphate isomerase KdsD -
  AB9X52_RS19725 (AB9X52_19720) kdsC 4137081..4137647 (+) 567 WP_017382729.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AB9X52_RS19730 (AB9X52_19725) lptC 4137644..4138219 (+) 576 WP_015571983.1 LPS export ABC transporter periplasmic protein LptC -
  AB9X52_RS19735 (AB9X52_19730) lptA 4138188..4138742 (+) 555 WP_063451030.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  AB9X52_RS19740 (AB9X52_19735) lptB 4138749..4139474 (+) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  AB9X52_RS19745 (AB9X52_19740) rpoN/rpoN1 4139522..4140955 (+) 1434 WP_003861864.1 RNA polymerase factor sigma-54 Machinery gene
  AB9X52_RS19750 (AB9X52_19745) hpf 4140978..4141265 (+) 288 WP_003861866.1 ribosome hibernation promoting factor -
  AB9X52_RS19755 (AB9X52_19750) ptsN 4141348..4141839 (+) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AB9X52_RS19760 (AB9X52_19755) rapZ 4141885..4142739 (+) 855 WP_003861870.1 RNase adapter RapZ -
  AB9X52_RS19765 (AB9X52_19760) npr 4142736..4143008 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  AB9X52_RS19770 (AB9X52_19765) mtgA 4143046..4143771 (-) 726 WP_375602021.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  AB9X52_RS19775 (AB9X52_19770) elbB 4143768..4144421 (-) 654 WP_375602022.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54099.96 Da        Isoelectric Point: 4.3358

>NTDB_id=1034449 AB9X52_RS19745 WP_003861864.1 4139522..4140955(+) (rpoN/rpoN1) [Enterobacter hormaechei strain 2024CK-00699]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1034449 AB9X52_RS19745 WP_003861864.1 4139522..4140955(+) (rpoN/rpoN1) [Enterobacter hormaechei strain 2024CK-00699]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGATACAGAAACGCTCGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACTACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTAGAGCTGACCCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGATACGGGCTATTTGACCGTGACGCTGGACGAG
ATCCTTGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTCCTGAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTCGCCGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACGCCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCAAATCATGACTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGTCCGGGGCAGTCGATCCAGACCAG
CGAACCGGAATATGTCATTCCTGATGTGCTGGTGAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCTCGTAACGACGCTGATAATCAATACATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTAATCAAGAGCCTTGAGAGCCGTAATGACACGCTGCTGCGCGTTAGCCGCTGTAT
TGTCGAACAGCAGCAGGCATTCTTTGAGCAGGGCGAAGAGTTTATGAAGCCGATGGTGCTGGCAGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGTCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCCATTCGCGCACTAGTGAAGAAATT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment