Detailed information NTG1034404

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9K38_RS22420
• Genome accession: NZ_CP166429
• Coordinates: 4785141..4785938 (+)
• Length: 265 a.a.
• NCBI ID: WP_004107997.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain 2024CK-00609
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4780141..4790938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9K38_RS22385 (AB9K38_22400)	gspH	4780285..4780797 (+)	513	WP_210614523.1	type II secretion system minor pseudopilin GspH	-
AB9K38_RS22390 (AB9K38_22405)	gspI	4780794..4781159 (+)	366	WP_004110668.1	type II secretion system minor pseudopilin GspI	-
AB9K38_RS22395 (AB9K38_22410)	gspJ	4781156..4781752 (+)	597	WP_004107987.1	type II secretion system minor pseudopilin GspJ	-
AB9K38_RS22400 (AB9K38_22415)	gspK	4781749..4782729 (+)	981	WP_004107989.1	type II secretion system minor pseudopilin GspK	-
AB9K38_RS22405 (AB9K38_22420)	gspL	4782722..4783912 (+)	1191	WP_004107991.1	type II secretion system protein GspL	-
AB9K38_RS22410 (AB9K38_22425)	gspM	4783905..4784390 (+)	486	WP_004107993.1	type II secretion system protein GspM	-
AB9K38_RS22415 (AB9K38_22430)	-	4784380..4785138 (+)	759	WP_004107995.1	type II secretion system protein N	-
AB9K38_RS22420 (AB9K38_22435)	pilD	4785141..4785938 (+)	798	WP_004107997.1	A24 family peptidase	Machinery gene
AB9K38_RS22425 (AB9K38_22440)	hrpB	4786036..4788465 (-)	2430	WP_210614520.1	ATP-dependent helicase HrpB	-
AB9K38_RS22430 (AB9K38_22445)	thpR	4788538..4789074 (+)	537	WP_004108002.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9K38_RS22435 (AB9K38_22450)	sfsA	4789074..4789790 (+)	717	WP_004108004.1	DNA/RNA nuclease SfsA	-
AB9K38_RS22440 (AB9K38_22455)	dksA	4789955..4790410 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29206.97 Da
• Isoelectric Point: 8.3391

>NTDB_id=1034404 AB9K38_RS22420 WP_004107997.1 4785141..4785938(+) (pilD) [Klebsiella oxytoca strain 2024CK-00609]
MENIALLSEFAAQFPLIWGGFLFLSGLAFGSFFNVVIHRLPLMMEYAEGVNLCFPASFCPQCRQPIAWRDNIPLLSFLWL
KGRSRCCGRPISRRYPLMELATGALFMLVGYLIPPGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLT
DLFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 798 bp

>NTDB_id=1034404 AB9K38_RS22420 WP_004107997.1 4785141..4785938(+) (pilD) [Klebsiella oxytoca strain 2024CK-00609]
GTGGAAAACATCGCATTGTTATCCGAGTTCGCCGCACAATTCCCGTTAATCTGGGGCGGTTTTTTATTCTTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAGTACGCAGAGGGAGTGAATCTCTGCT
TCCCCGCATCGTTCTGTCCGCAGTGCCGTCAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AAGGGGCGTTCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGGTACCTGATCCCTCCTGGCATGCCGCTGCTGGGCGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACC
GATCTCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGGCGCTGCCGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCGCTCGAACAGCCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.042	98.491	0.483
pilD	Neisseria gonorrhoeae MS11	45.324	100	0.475
pilD	Vibrio campbellii strain DS40M4	44.043	100	0.46
pilD	Acinetobacter nosocomialis M2	45.56	97.736	0.445
pilD	Acinetobacter baumannii D1279779	45.174	97.736	0.442