Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QUE82_RS18990 Genome accession   NZ_AP028059
Coordinates   3544221..3544910 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain NARUSE     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3539221..3549910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE82_RS18955 (BSNN_37150) flgN 3539401..3539883 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QUE82_RS18960 (BSNN_37160) flgM 3539899..3540165 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QUE82_RS18965 (BSNN_37170) yvyF 3540246..3540665 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  QUE82_RS18970 (BSNN_37180) comFC 3540738..3541460 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QUE82_RS18975 (BSNN_37190) comFB 3541424..3541720 (-) 297 WP_003227989.1 late competence protein ComFB -
  QUE82_RS18980 (BSNN_37200) comFA 3541780..3543171 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  QUE82_RS18985 (BSNN_37210) fakBA 3543278..3544123 (-) 846 WP_014481053.1 DegV family protein -
  QUE82_RS18990 (BSNN_37220) degU 3544221..3544910 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  QUE82_RS18995 (BSNN_37230) degS 3544993..3546150 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QUE82_RS19000 (BSNN_37240) - 3546367..3547020 (+) 654 WP_014481055.1 YigZ family protein -
  QUE82_RS19005 (BSNN_37250) - 3547020..3548012 (+) 993 WP_014481056.1 LCP family protein -
  QUE82_RS19010 (BSNN_37260) - 3548610..3549074 (+) 465 WP_225910700.1 hypothetical protein -
  QUE82_RS19015 (BSNN_37270) - 3549123..3549578 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=103429 QUE82_RS18990 WP_014481054.1 3544221..3544910(-) (degU) [Bacillus subtilis subsp. natto strain NARUSE]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=103429 QUE82_RS18990 WP_014481054.1 3544221..3544910(-) (degU) [Bacillus subtilis subsp. natto strain NARUSE]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment