Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB6A22_RS01765 Genome accession   NZ_CP166297
Coordinates   323666..324103 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain FCW119-1M2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 318666..329103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6A22_RS01725 (AB6A22_01725) - 319246..319371 (-) 126 Protein_299 hypothetical protein -
  AB6A22_RS01730 (AB6A22_01730) - 319524..320726 (+) 1203 WP_069473143.1 GTP-binding protein -
  AB6A22_RS01735 (AB6A22_01735) - 320791..321927 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  AB6A22_RS01740 (AB6A22_01740) - 321942..322376 (+) 435 WP_003156592.1 RDD family protein -
  AB6A22_RS01745 (AB6A22_01745) - 322493..322768 (+) 276 WP_369719109.1 YckD family protein -
  AB6A22_RS01750 (AB6A22_01750) - 322872..322988 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  AB6A22_RS01755 (AB6A22_01755) - 322987..323205 (+) 219 Protein_305 family 1 glycosylhydrolase -
  AB6A22_RS01760 (AB6A22_01760) nin/comJ 323246..323644 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  AB6A22_RS01765 (AB6A22_01765) nucA/comI 323666..324103 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB6A22_RS01770 (AB6A22_01770) hxlB 324462..325019 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  AB6A22_RS01775 (AB6A22_01775) hxlA 325016..325651 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  AB6A22_RS01780 (AB6A22_01780) - 325883..326245 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1034026 AB6A22_RS01765 WP_003156588.1 323666..324103(-) (nucA/comI) [Bacillus velezensis strain FCW119-1M2]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1034026 AB6A22_RS01765 WP_003156588.1 323666..324103(-) (nucA/comI) [Bacillus velezensis strain FCW119-1M2]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment