Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB9G37_RS01325 Genome accession   NZ_CP166295
Coordinates   251499..253316 (+) Length   605 a.a.
NCBI ID   WP_137600644.1    Uniprot ID   -
Organism   Weissella sagaensis strain ZD-66     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 246499..258316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9G37_RS01295 (AB9G37_01295) - 246557..247063 (+) 507 WP_042493408.1 antibiotic biosynthesis monooxygenase -
  AB9G37_RS01300 (AB9G37_01300) - 247268..247771 (+) 504 WP_042493410.1 phosphate-starvation-inducible PsiE family protein -
  AB9G37_RS01305 (AB9G37_01305) - 247803..248810 (+) 1008 WP_137600647.1 toxic anion resistance protein -
  AB9G37_RS01310 (AB9G37_01310) spx 248946..249344 (+) 399 WP_042493413.1 transcriptional regulator Spx -
  AB9G37_RS01315 (AB9G37_01315) - 249505..250263 (+) 759 WP_042493415.1 adaptor protein MecA -
  AB9G37_RS01320 (AB9G37_01320) - 250407..251189 (+) 783 WP_370398718.1 competence protein CoiA -
  AB9G37_RS01325 (AB9G37_01325) pepF 251499..253316 (+) 1818 WP_137600644.1 oligoendopeptidase F Regulator
  AB9G37_RS01330 (AB9G37_01330) - 253434..253832 (+) 399 WP_042493417.1 DUF948 domain-containing protein -
  AB9G37_RS01335 (AB9G37_01335) - 253857..254417 (+) 561 WP_042493419.1 hypothetical protein -
  AB9G37_RS01340 (AB9G37_01340) - 254486..255586 (-) 1101 WP_042493420.1 Xaa-Pro peptidase family protein -
  AB9G37_RS01345 (AB9G37_01345) ccpA 255846..256850 (+) 1005 WP_042493422.1 catabolite control protein A -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68630.42 Da        Isoelectric Point: 4.3225

>NTDB_id=1034002 AB9G37_RS01325 WP_137600644.1 251499..253316(+) (pepF) [Weissella sagaensis strain ZD-66]
MAKELPLRNELPESATWDLTKIFASDTDWQTAYDELNERLVNADFFAQTAINSGKDLYNALQYGLGLMRDLETLYVYASM
KSDQDTANGFYQGLINKAESLAAKVSAAISFFDPAVLSLSTDQLADYFSQEPRLQEYTHYFDDILTQKGHVLSENQEKLL
AAAGDIFGASERTFGMLDNADITFDAVENDEGELETLSDGVYSRLLESVKPEVRKNAFKTFYASYMALDNTFASLIGNHV
KGHNYLADVHHYDSARQAALAANNVPEVVYDTLVEEVNKALPLLHRYMALRKRLLGLSELHSYDLYTPILGEPDYDIDYP
SAQAEALKALAPLGQDYLDIVQKAFDNRWIDVIENKGKRSGAYSGGAYDTNPYILLNWVDNLNNLSTLVHEMGHSVHSYL
TRENQPYQYGDYPIFLAEIASTTNENLLTDYLLRTVEDKKLKAYILNQYLDGVKGTLFRQTQFAEFEQWMHETDAQGTPL
TADILNEAYGELNKHYYGSTLTVDEEIAHEWERIPHFYYNYYVFQYSTGFAAATALADKILHEGDQAVNDYKDYLKTGSS
AFPIDVMKKAGVDMTKPDYLRETFAVFEERLNEFEALVDELSLDK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1034002 AB9G37_RS01325 WP_137600644.1 251499..253316(+) (pepF) [Weissella sagaensis strain ZD-66]
ATGGCAAAAGAATTACCTTTACGTAATGAGTTACCAGAATCAGCTACTTGGGATTTAACAAAGATTTTTGCAAGTGATAC
TGATTGGCAAACTGCGTACGATGAATTAAATGAACGACTAGTAAATGCTGATTTTTTTGCCCAAACGGCAATCAATTCAG
GTAAAGACCTTTATAACGCATTACAATATGGCCTAGGCCTAATGCGTGATTTGGAAACGTTGTATGTCTATGCATCTATG
AAATCAGATCAAGATACAGCAAATGGATTTTACCAAGGATTAATTAATAAAGCAGAGTCATTAGCAGCTAAGGTATCAGC
TGCAATTTCTTTTTTTGATCCAGCTGTATTATCACTTTCAACAGATCAGTTAGCTGATTATTTTTCACAAGAACCTCGTT
TGCAAGAATATACGCATTATTTTGATGATATTCTAACGCAAAAGGGTCATGTCTTATCAGAGAATCAAGAAAAACTTTTG
GCAGCAGCTGGTGATATCTTTGGTGCATCTGAGCGAACGTTTGGTATGTTAGATAATGCTGATATTACTTTTGATGCTGT
AGAAAATGATGAAGGTGAATTAGAAACTTTGTCAGATGGTGTATATTCACGCTTACTAGAATCTGTTAAACCTGAAGTTA
GAAAAAATGCTTTCAAGACCTTTTATGCCTCATATATGGCTTTGGATAATACTTTTGCTTCTTTAATTGGGAACCATGTT
AAAGGACACAATTATTTAGCAGATGTTCATCATTACGATTCAGCTAGACAAGCGGCTTTAGCAGCTAATAATGTGCCAGA
AGTTGTGTATGATACACTGGTTGAAGAAGTAAATAAGGCTTTACCATTGTTGCACCGTTATATGGCTTTGCGCAAACGTT
TATTAGGTCTCTCAGAACTACATTCATATGACTTATATACACCAATTCTTGGCGAACCAGATTATGATATTGATTATCCT
AGTGCACAAGCAGAAGCATTAAAGGCTCTGGCTCCCTTAGGTCAAGATTACCTTGATATTGTGCAAAAAGCATTTGATAA
TCGCTGGATTGATGTCATTGAAAATAAAGGAAAGCGCTCTGGTGCCTATTCAGGGGGCGCTTATGATACAAACCCCTATA
TTTTGTTAAACTGGGTTGATAATCTTAATAACTTGAGTACATTGGTGCATGAAATGGGTCATTCCGTCCATTCATACCTA
ACACGAGAAAATCAACCTTATCAATATGGTGATTATCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAACTT
ATTAACTGATTATTTATTACGCACAGTAGAAGATAAAAAATTAAAGGCTTATATCTTAAATCAATACCTAGATGGTGTTA
AAGGGACGTTGTTCCGCCAGACACAATTTGCTGAATTTGAGCAATGGATGCACGAAACTGATGCGCAAGGCACACCATTA
ACAGCAGACATTTTGAATGAAGCCTATGGTGAATTGAATAAGCATTATTATGGTTCAACATTAACGGTTGATGAAGAAAT
TGCACATGAATGGGAACGTATTCCACACTTCTATTATAATTATTATGTTTTCCAGTATAGTACAGGGTTTGCAGCTGCTA
CTGCATTAGCAGATAAAATTTTACATGAAGGTGATCAGGCTGTTAATGACTACAAAGATTATCTAAAAACAGGGTCATCA
GCTTTTCCAATTGATGTGATGAAAAAAGCAGGTGTTGATATGACGAAACCAGATTACTTGCGAGAAACTTTTGCCGTGTT
TGAGGAACGCCTAAATGAATTCGAAGCACTAGTTGATGAATTATCATTAGATAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-584)

Oligopeptidase F (Peptidase_M3_N)

(117-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.3

98.017

0.532

Multiple sequence alignment