Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB9Q24_RS16190 Genome accession   NZ_CP166227
Coordinates   3305758..3306354 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain hvKP 287     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300758..3311354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9Q24_RS16175 (AB9Q24_16160) helD 3300966..3303020 (-) 2055 WP_135695308.1 DNA helicase IV -
  AB9Q24_RS16180 (AB9Q24_16165) - 3303145..3303591 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AB9Q24_RS16185 (AB9Q24_16170) yccS 3303609..3305744 (+) 2136 WP_004147856.1 YccS family putative transporter -
  AB9Q24_RS16190 (AB9Q24_16175) sxy/tfoX 3305758..3306354 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AB9Q24_RS16195 (AB9Q24_16180) sulA 3306703..3307212 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  AB9Q24_RS16200 (AB9Q24_16185) ompA 3307565..3308635 (+) 1071 WP_002898408.1 porin OmpA -
  AB9Q24_RS16205 (AB9Q24_16190) matP 3308767..3309219 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB9Q24_RS16210 (AB9Q24_16195) - 3309405..3311162 (+) 1758 WP_370429559.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1033879 AB9Q24_RS16190 WP_004179217.1 3305758..3306354(-) (sxy/tfoX) [Klebsiella pneumoniae strain hvKP 287]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1033879 AB9Q24_RS16190 WP_004179217.1 3305758..3306354(-) (sxy/tfoX) [Klebsiella pneumoniae strain hvKP 287]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment