Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DXE47_RS04080 Genome accession   NZ_LT992468
Coordinates   696324..696794 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus isolate 12_LA_293     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 691324..701794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE47_RS04060 coaW 691635..692438 (+) 804 WP_000862732.1 type II pantothenate kinase -
  DXE47_RS04065 - 692568..693239 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  DXE47_RS04070 ldmS 693638..694831 (-) 1194 WP_000183714.1 L-aspartate--L-methionine ligase LdmS -
  DXE47_RS04075 - 694831..696015 (-) 1185 WP_001291508.1 M20 family metallopeptidase -
  DXE47_RS04080 luxS 696324..696794 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  DXE47_RS04085 - 696946..697296 (-) 351 WP_001024035.1 membrane protein -
  DXE47_RS04090 - 697310..698611 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  DXE47_RS04100 deoC 698891..699553 (-) 663 WP_001083328.1 deoxyribose-phosphate aldolase -
  DXE47_RS04105 deoD 699867..700577 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  DXE47_RS04110 - 700698..701141 (-) 444 WP_000070865.1 Dps family protein -
  DXE47_RS04115 - 701341..701754 (-) 414 WP_001123309.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=1033832 DXE47_RS04080 WP_000164421.1 696324..696794(+) (luxS) [Staphylococcus aureus isolate 12_LA_293]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1033832 DXE47_RS04080 WP_000164421.1 696324..696794(+) (luxS) [Staphylococcus aureus isolate 12_LA_293]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCAGCTTGTAATGAAGTACAATGTGGCTGGGCAGCTAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404