Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QUE82_RS05900 Genome accession   NZ_AP028059
Coordinates   1139151..1139729 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. natto strain NARUSE     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134151..1144729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE82_RS05880 (BSNN_11030) hemAT 1134671..1135969 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  QUE82_RS05885 comW 1136108..1137636 (-) 1529 Protein_1092 FAD-dependent oxidoreductase -
  QUE82_RS05890 (BSNN_11070) yhxC 1137740..1138597 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  QUE82_RS05895 (BSNN_11080) yhzC 1138625..1138858 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QUE82_RS05900 (BSNN_11090) comK 1139151..1139729 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  QUE82_RS05905 (BSNN_11100) yhxD 1139774..1140673 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  QUE82_RS05910 (BSNN_11110) yhjA 1140890..1141159 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  QUE82_RS05915 (BSNN_11120) yhjB 1141203..1142672 (-) 1470 WP_014479374.1 sodium:solute symporter -
  QUE82_RS05920 (BSNN_11130) yhjC 1142669..1142869 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QUE82_RS05925 (BSNN_11140) - 1143068..1143439 (-) 372 WP_014476361.1 hypothetical protein -
  QUE82_RS05930 (BSNN_11150) yhjE 1143591..1144214 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  QUE82_RS05935 (BSNN_11160) lepB 1144216..1144722 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=103377 QUE82_RS05900 WP_003245329.1 1139151..1139729(+) (comK) [Bacillus subtilis subsp. natto strain NARUSE]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=103377 QUE82_RS05900 WP_003245329.1 1139151..1139729(+) (comK) [Bacillus subtilis subsp. natto strain NARUSE]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment