Detailed information NTG1033720

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9C65_RS23325
• Genome accession: NZ_CP166204
• Coordinates: 4911275..4912075 (+)
• Length: 266 a.a.
• NCBI ID: WP_139529304.1
• Uniprot ID: -
• Organism: Klebsiella pasteurii strain 2023CK-01306
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4906275..4917075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9C65_RS23290 (AB9C65_23305)	gspH	4906416..4906928 (+)	513	WP_004129078.1	type II secretion system minor pseudopilin GspH	-
AB9C65_RS23295 (AB9C65_23310)	gspI	4906925..4907290 (+)	366	WP_049115511.1	type II secretion system minor pseudopilin GspI	-
AB9C65_RS23300 (AB9C65_23315)	gspJ	4907287..4907883 (+)	597	WP_139529307.1	type II secretion system minor pseudopilin GspJ	-
AB9C65_RS23305 (AB9C65_23320)	gspK	4907880..4908860 (+)	981	WP_139529306.1	type II secretion system minor pseudopilin GspK	-
AB9C65_RS23310 (AB9C65_23325)	gspL	4908853..4910049 (+)	1197	WP_139529305.1	type II secretion system protein GspL	-
AB9C65_RS23315 (AB9C65_23330)	gspM	4910042..4910527 (+)	486	WP_087828445.1	type II secretion system protein GspM	-
AB9C65_RS23320 (AB9C65_23335)	-	4910517..4911275 (+)	759	WP_004129061.1	type II secretion system protein N	-
AB9C65_RS23325 (AB9C65_23340)	pilD	4911275..4912075 (+)	801	WP_139529304.1	A24 family peptidase	Machinery gene
AB9C65_RS23330 (AB9C65_23345)	hrpB	4912173..4914602 (-)	2430	WP_139529303.1	ATP-dependent helicase HrpB	-
AB9C65_RS23335 (AB9C65_23350)	thpR	4914675..4915211 (+)	537	WP_004129056.1	RNA 2',3'-cyclic phosphodiesterase	-
AB9C65_RS23340 (AB9C65_23355)	sfsA	4915211..4915927 (+)	717	WP_139529302.1	DNA/RNA nuclease SfsA	-
AB9C65_RS23345 (AB9C65_23360)	dksA	4916092..4916547 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29031.57 Da
• Isoelectric Point: 6.4377

>NTDB_id=1033720 AB9C65_RS23325 WP_139529304.1 4911275..4912075(+) (pilD) [Klebsiella pasteurii strain 2023CK-01306]
MFENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMAHAEGINLCFPASFCPQCREPIAWRDNIPLLSFLF
LKGRSRCCGEPISPRYPLMELATGALFMLVGYLIPPGIPLLGGLLLLSVLLILATIDAQTQLLPDGLTLPLLWAGLLFSL
SDTFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPQTLLLASASGLVWTLLQRLITR
QSFQQPLAFGPWLALAGGGIFLWSQV

Nucleotide

• Length: 801 bp

>NTDB_id=1033720 AB9C65_RS23325 WP_139529304.1 4911275..4912075(+) (pilD) [Klebsiella pasteurii strain 2023CK-01306]
ATGTTCGAAAACATCGCGTTATTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGG
ACTGGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGCGCACGCAGAGGGAATCAATCTCT
GTTTTCCCGCGTCGTTCTGTCCGCAGTGCCGTGAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTCCTGTTT
CTTAAGGGACGTTCGCGCTGCTGCGGGGAACCCATCTCGCCTCGTTATCCTCTGATGGAGCTGGCGACCGGCGCGCTGTT
TATGCTGGTCGGATACCTGATACCTCCGGGCATACCGCTGCTGGGCGGCTTGCTTCTGCTGTCGGTTCTACTGATTCTTG
CTACCATCGACGCGCAAACGCAGCTGCTGCCGGACGGGTTGACGCTACCGCTGCTGTGGGCCGGTCTGCTGTTCAGTCTT
TCCGATACCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGT
GTTCCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCT
GGCAGGCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGCCTGGTCTGGACGCTGCTGCAGCGCCTGATAACCCGG
CAGTCGTTCCAGCAGCCTTTGGCCTTCGGGCCTTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATA
A

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-111)

• Type IV leader peptidase family (Peptidase_A24) (124-232)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.496
pilD	Neisseria gonorrhoeae MS11	47.036	95.113	0.447
pilD	Vibrio campbellii strain DS40M4	42.545	100	0.44
pilD	Acinetobacter nosocomialis M2	43.629	97.368	0.425
pilD	Acinetobacter baumannii D1279779	43.243	97.368	0.421