Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB8P53_RS03720 Genome accession   NZ_CP166198
Coordinates   681688..683493 (-) Length   601 a.a.
NCBI ID   WP_085763094.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain BD-LB     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 676688..688493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P53_RS03695 (AB8P53_03700) - 677284..678183 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  AB8P53_RS03700 (AB8P53_03705) - 678180..678983 (-) 804 WP_021740943.1 NAD kinase -
  AB8P53_RS03705 (AB8P53_03710) - 678985..679644 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  AB8P53_RS03710 (AB8P53_03715) - 679971..680609 (+) 639 WP_043022825.1 ClpXP adapter SpxH family protein -
  AB8P53_RS03715 (AB8P53_03720) - 680771..681634 (+) 864 WP_011668200.1 DegV family protein -
  AB8P53_RS03720 (AB8P53_03725) pepF 681688..683493 (-) 1806 WP_085763094.1 oligoendopeptidase F Regulator
  AB8P53_RS03725 (AB8P53_03730) - 683560..684654 (-) 1095 WP_369957432.1 competence protein CoiA -
  AB8P53_RS03730 (AB8P53_03735) trmB 684781..685428 (-) 648 WP_043022829.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AB8P53_RS03735 (AB8P53_03740) - 685494..686285 (-) 792 WP_043022830.1 phosphotransferase family protein -
  AB8P53_RS03740 (AB8P53_03745) - 686347..687573 (-) 1227 WP_043022831.1 ABC transporter permease -
  AB8P53_RS03745 (AB8P53_03750) - 687570..688304 (-) 735 WP_085763091.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67189.19 Da        Isoelectric Point: 4.8201

>NTDB_id=1033662 AB8P53_RS03720 WP_085763094.1 681688..683493(-) (pepF) [Levilactobacillus brevis strain BD-LB]
MKQIPKRSEVPTSLTWDLTTIFPDEAAFKAAIAAIKTQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNEPRLADYQHVFDVLGQQRAHTLSVAQEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNNHLDSLHRYVNLRKEILDLPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAYELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1033662 AB8P53_RS03720 WP_085763094.1 681688..683493(-) (pepF) [Levilactobacillus brevis strain BD-LB]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACATCATTGACTTGGGACCTAACAACTATTTTTCCTGACGAGGCAGC
TTTTAAGGCCGCAATTGCTGCGATTAAAACGCAAACAACGGTCGTGGCCGGTTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCAGCCCAAGCATTAATGGGGCAAGCCGAGAGTTTGGTGGCAACTGTGGGTGCGGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGTTGATTGATAACGAACCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAGCGGGCACATACGCTGTCAGTGGCGCAAGAAAAATTGTTAGCG
GGTGCTAGTGATATCTTTGGTGCGTCTGCTAAAACTTACAGCGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAAGCCGGCAATGATGTGCGACTGTCAGAGGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCCGCAACCTTAGCGAGCGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCGATGAGTCGCAACAATGTGCCAGCGGT
GGTCTATGATACCCTGGTGGAAACAGTCAATAATCATTTAGACTCACTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGACTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTCTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGCCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAACGGACGGGCGCTTACTCAGGCGGGATGTATGATACTAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGTATGAATTAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491

Multiple sequence alignment