Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB8858_RS01520 Genome accession   NZ_CP166127
Coordinates   322936..324300 (+) Length   454 a.a.
NCBI ID   WP_009871646.1    Uniprot ID   O84300
Organism   Chlamydia trachomatis strain B/TW-5/OT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 317936..329300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8858_RS01495 (AB8858_01495) accD 317999..318925 (-) 927 WP_009871641.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  AB8858_RS01500 (AB8858_01500) - 318996..319616 (-) 621 WP_009871642.1 superoxide dismutase -
  AB8858_RS01505 (AB8858_01505) - 319748..321529 (-) 1782 WP_009871643.1 phospho-sugar mutase -
  AB8858_RS01510 (AB8858_01510) - 321681..322148 (-) 468 WP_009871644.1 DUF5070 domain-containing protein -
  AB8858_RS01515 (AB8858_01515) rnc 322257..322952 (+) 696 WP_009871645.1 ribonuclease III -
  AB8858_RS01520 (AB8858_01520) radA 322936..324300 (+) 1365 WP_009871646.1 DNA repair protein RadA Machinery gene
  AB8858_RS01525 (AB8858_01525) - 324278..325003 (+) 726 WP_024067173.1 hydroxymethylbilane synthase -
  AB8858_RS01530 (AB8858_01530) - 325396..325698 (+) 303 WP_322631880.1 hypothetical protein -
  AB8858_RS01535 (AB8858_01535) pknD 325796..328600 (-) 2805 WP_322631881.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49783.25 Da        Isoelectric Point: 7.5070

>NTDB_id=1033554 AB8858_RS01520 WP_009871646.1 322936..324300(+) (radA) [Chlamydia trachomatis strain B/TW-5/OT]
MTTKIKTQWTCTECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNA
HANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLIEVQALVSSSPFSNPV
RKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1033554 AB8858_RS01520 WP_009871646.1 322936..324300(+) (radA) [Chlamydia trachomatis strain B/TW-5/OT]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCCAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTTTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGTAATGCG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATGCATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATTA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTATAGAAGTTCAGGCTCTCGTTTCTTCATCCCCATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTATCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTCTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O84300

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.491
  radA Streptococcus pneumoniae Rx1

47.124

99.559

0.469
  radA Streptococcus pneumoniae D39

47.124

99.559

0.469
  radA Streptococcus pneumoniae R6

47.124

99.559

0.469
  radA Streptococcus pneumoniae TIGR4

47.124

99.559

0.469
  radA Streptococcus mitis NCTC 12261

46.903

99.559

0.467
  radA Streptococcus mitis SK321

46.444

99.119

0.46

Multiple sequence alignment