Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB8869_RS01570 Genome accession   NZ_CP166117
Coordinates   332475..333839 (+) Length   454 a.a.
NCBI ID   WP_009871646.1    Uniprot ID   O84300
Organism   Chlamydia trachomatis strain Ia/UW-202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327475..338839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8869_RS01545 (AB8869_01545) accD 327537..328463 (-) 927 WP_009871641.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  AB8869_RS01550 (AB8869_01550) - 328535..329155 (-) 621 WP_009871642.1 superoxide dismutase -
  AB8869_RS01555 (AB8869_01555) - 329287..331068 (-) 1782 WP_015506055.1 phospho-sugar mutase -
  AB8869_RS01560 (AB8869_01560) - 331220..331687 (-) 468 WP_009871644.1 DUF5070 domain-containing protein -
  AB8869_RS01565 (AB8869_01565) rnc 331796..332491 (+) 696 WP_009871645.1 ribonuclease III -
  AB8869_RS01570 (AB8869_01570) radA 332475..333839 (+) 1365 WP_009871646.1 DNA repair protein RadA Machinery gene
  AB8869_RS01575 (AB8869_01575) - 333817..334542 (+) 726 WP_009871647.1 hydroxymethylbilane synthase -
  AB8869_RS01580 (AB8869_01580) - 334935..335282 (+) 348 WP_010725152.1 hypothetical protein -
  AB8869_RS01585 (AB8869_01585) pknD 335335..338139 (-) 2805 WP_015506056.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49783.25 Da        Isoelectric Point: 7.5070

>NTDB_id=1033494 AB8869_RS01570 WP_009871646.1 332475..333839(+) (radA) [Chlamydia trachomatis strain Ia/UW-202]
MTTKIKTQWTCTECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNA
HANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLIEVQALVSSSPFSNPV
RKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1033494 AB8869_RS01570 WP_009871646.1 332475..333839(+) (radA) [Chlamydia trachomatis strain Ia/UW-202]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCCAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTTTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGTAATGCG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATGCATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATTA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTATAGAAGTTCAGGCTCTCGTTTCTTCATCCCCATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTATCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTCTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O84300

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.491
  radA Streptococcus pneumoniae Rx1

47.124

99.559

0.469
  radA Streptococcus pneumoniae D39

47.124

99.559

0.469
  radA Streptococcus pneumoniae R6

47.124

99.559

0.469
  radA Streptococcus pneumoniae TIGR4

47.124

99.559

0.469
  radA Streptococcus mitis NCTC 12261

46.903

99.559

0.467
  radA Streptococcus mitis SK321

46.444

99.119

0.46

Multiple sequence alignment