Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB8868_RS01580 Genome accession   NZ_CP166115
Coordinates   331693..333057 (+) Length   454 a.a.
NCBI ID   WP_014541245.1    Uniprot ID   -
Organism   Chlamydia trachomatis strain Ja/UW-92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 326693..338057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8868_RS01555 (AB8868_01555) accD 326755..327681 (-) 927 WP_009871641.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  AB8868_RS01560 (AB8868_01560) - 327753..328373 (-) 621 WP_009872533.1 superoxide dismutase -
  AB8868_RS01565 (AB8868_01565) - 328505..330286 (-) 1782 WP_009872534.1 phospho-sugar mutase -
  AB8868_RS01570 (AB8868_01570) - 330438..330905 (-) 468 WP_009872535.1 DUF5070 domain-containing protein -
  AB8868_RS01575 (AB8868_01575) rnc 331014..331709 (+) 696 WP_009872536.1 ribonuclease III -
  AB8868_RS01580 (AB8868_01580) radA 331693..333057 (+) 1365 WP_014541245.1 DNA repair protein RadA Machinery gene
  AB8868_RS01585 (AB8868_01585) - 333035..333760 (+) 726 WP_009872538.1 hydroxymethylbilane synthase -
  AB8868_RS01590 (AB8868_01590) - 334155..334502 (+) 348 WP_014541817.1 hypothetical protein -
  AB8868_RS01595 (AB8868_01595) pknD 334547..337351 (-) 2805 WP_014541246.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49801.31 Da        Isoelectric Point: 7.5070

>NTDB_id=1033482 AB8868_RS01580 WP_014541245.1 331693..333057(+) (radA) [Chlamydia trachomatis strain Ja/UW-92]
MTTKIKTQWTCTECGTHSLKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNA
HANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEVQALVSSSLFSNPV
RKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1033482 AB8868_RS01580 WP_014541245.1 331693..333057(+) (radA) [Chlamydia trachomatis strain Ja/UW-92]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCTAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTCTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGCAATGCG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATGCATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATCA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTGTAGAAGTTCAGGCTCTCGTTTCTTCATCCCTATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTGTCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTTTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.491
  radA Streptococcus pneumoniae Rx1

46.903

99.559

0.467
  radA Streptococcus pneumoniae D39

46.903

99.559

0.467
  radA Streptococcus pneumoniae R6

46.903

99.559

0.467
  radA Streptococcus pneumoniae TIGR4

46.903

99.559

0.467
  radA Streptococcus mitis NCTC 12261

46.681

99.559

0.465
  radA Streptococcus mitis SK321

46.222

99.119

0.458

Multiple sequence alignment