Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB8814_RS15695 Genome accession   NZ_CP166090
Coordinates   3745909..3747300 (-) Length   463 a.a.
NCBI ID   WP_205392080.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain NCPPB 4692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3740909..3752300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8814_RS15680 (AB8814_15675) - 3741889..3743244 (-) 1356 WP_174556022.1 helix-turn-helix transcriptional regulator -
  AB8814_RS15685 (AB8814_15680) - 3744169..3744954 (+) 786 WP_023903139.1 response regulator transcription factor -
  AB8814_RS15690 (AB8814_15685) - 3745077..3745463 (-) 387 WP_205392079.1 DUF805 domain-containing protein -
  AB8814_RS15695 (AB8814_15690) radA 3745909..3747300 (-) 1392 WP_205392080.1 DNA repair protein RadA Machinery gene
  AB8814_RS15700 (AB8814_15695) - 3747692..3749572 (-) 1881 WP_205392081.1 M61 family metallopeptidase -
  AB8814_RS15705 (AB8814_15700) cyoD 3749745..3750080 (-) 336 WP_006450195.1 cytochrome o ubiquinol oxidase subunit IV -
  AB8814_RS15710 (AB8814_15705) cyoC 3750080..3750709 (-) 630 WP_006450194.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48725.99 Da        Isoelectric Point: 7.3522

>NTDB_id=1033325 AB8814_RS15695 WP_205392080.1 3745909..3747300(-) (radA) [Xanthomonas hydrangeae strain NCPPB 4692]
MAKAKIAYVCGECGAEYNKWQGQCTECGVWNTLSEIVLESATPGGKASPAASRRTGWSGKTEAPKITALKDVRQSEQARV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAET
GIENILQHASVARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPKANAPKTTSIKGMEIIAVERLSQALEAAAD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1033325 AB8814_RS15695 WP_205392080.1 3745909..3747300(-) (radA) [Xanthomonas hydrangeae strain NCPPB 4692]
ATGGCGAAGGCAAAAATAGCCTATGTCTGCGGCGAGTGTGGCGCCGAATACAACAAGTGGCAGGGGCAATGCACCGAGTG
CGGGGTGTGGAATACGCTCAGCGAAATCGTGCTCGAAAGCGCAACCCCCGGTGGCAAGGCATCGCCGGCGGCTTCGCGCC
GCACCGGTTGGTCGGGCAAGACCGAGGCGCCCAAGATCACCGCGCTCAAGGACGTGCGCCAATCCGAACAGGCGCGCGTG
TCCACCGGCATCGGCGAGTTCGATCGGGTGCTGGGCGGCGGTCTGGTCGAAGGCGCGGTGGTGTTGATCGGTGGCGACCC
CGGCATCGGCAAGTCGACGTTGTTGCTGCAGGCATTGGCCAGCATGGCCAGTACGCTGCCGGTGCTGTACGTCACCGGCG
AAGAATCGCTGGCCCAGGTCGCAGGACGTGCGGTGCGCCTGGATCTGCCGCTGGAGGGCCTGAATGCGCTGGCCGAAACC
GGCATCGAAAACATCCTGCAGCACGCCAGCGTGGCGCGGCCGAAGCTGATCGTGGCCGACTCGGTACAGACCTTGTGGAC
CGAATCGCTGACCGCAGCGCCGGGCTCGGTGAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTATGCCAAGGAAA
CCGGCACCGCCGTCTTCCTGGTCGGCCATGTGACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTGGAGCATATGGTC
GATGCGGTGCTGTACTTCGAAGGCGAAAGCGGCAGCCGGTTTCGCTTGCTGCGCGCCTTCAAGAATCGCTTCGGTGCGGT
CAACGAGCTGGGCGTATTCGCGATGGGCGAGAAGGGCCTCAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGCG
GCAGCACCCAGCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGGCCGCTGATGGTGGAAGTGCAGGCGCTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGTCGGGTCGCGGTGGGGTTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGT
GCTGCATCGCCATGGCGGCATCGTGGTGGGCGATCAGGACGTCTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAAA
CTGCGGCCGATCTGCCGGTGTTGCTTGCAGTGTTGTCCTCGTTGCGCGACCGGCCATTGGCCGAGAAGACGATCGCCTTC
GGCGAGGTGGGGTTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGCCTGAAAGAAGCCGCCACCCATGGTTT
CAAGCGCGCGATCGTGCCCAAGGCCAATGCACCGAAGACCACCAGCATCAAGGGCATGGAGATCATTGCGGTGGAGCGGC
TGAGCCAGGCCTTGGAAGCGGCGGCTGACTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(80-156)

Subunit ChlI of Mg-chelatase (ChlI)

(352-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.164

100

0.482
  radA Streptococcus mitis NCTC 12261

43.696

99.352

0.434
  radA Streptococcus pneumoniae Rx1

43.696

99.352

0.434
  radA Streptococcus pneumoniae D39

43.696

99.352

0.434
  radA Streptococcus pneumoniae R6

43.696

99.352

0.434
  radA Streptococcus pneumoniae TIGR4

43.696

99.352

0.434
  radA Streptococcus mitis SK321

43.478

99.352

0.432

Multiple sequence alignment